1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggttattgatgttaagataattgtgtagcattgtatcatcttctcagctctgcatcctgtattattgactggcaatctgaatttcttggcgttgtcccagGCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACGTACGGTGATCAGTCCAACACCAACGGTGATTTGGCCTTCGAAACGATTT
species | Physcomitrella patens |
transcript | PP1S6_39V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAATCCCGCTCCTTTCGCA-GGCTGCTTGCACCGATAACCTGTGTAAT GCTCTTCCTCTTEST: gi|208375610|gb|DC902827.1|DC902827
genomic: CCAAATCCCGCTCCTTTCGCAAGGCTGCTTGCACCGATAACCTGTGTAATgtaagtgttg ... gttgtcccagGCTCTTCCTCTT
EST: CCAAATCCCGCTCCTTTCGCAAGGCTGCTTGCACCGATAACCTGTGTAAT GCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACGEST: gi|208384726|gb|DC915273.1|DC915273
genomic: CCAAATCCCGCTCCTTTCGCAAGGCTGCTTGCACCGATAACCTGTGTAATgtaagtgttg ... gttgtcccagGCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACG
EST: CCAAATCCCGCTCCTTTCGCAAGGCTGCTTGCACCGATAACCTGTGTAAT GCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACGEST: gi|100422995|gb|BY958103.1|BY958103
genomic: CCAAATCCCGCTCCTTTCGCAAGGCTGCTTGCACCGATAACCTGTGTAATgtaagtgttg ... gttgtcccagGCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACG
EST: CCAAATCCCGCTCCTTTCGCAAGGCTGCTTGCACCGATAACCTGTGTAAT GCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACGEST: gi|100375001|gb|BY949146.1|BY949146
genomic: CCAAATCCCGCTCCTTTCGCAAGGCTGCTTGCACCGATAACCTGTGTAATgtaagtgttg ... gttgtcccagGCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACG
EST: CAAATCCCGCTCCTTTCGNCA-GGCTGCTTGCACCGATAACCTGTGTAAT GCTCTTCCCTCTTA-GGCTTGTGCTGCCAACGTCTGTCAATATCAATATACEST: gi|100414271|gb|BY992695.1|BY992695
genomic: CAAATCCCGCTCCTTTCG-CAAGGCTGCTTGCACCGATAACCTGTGTAATgtaagtgttg ... gttgtcccagGCTCTTCC-TCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATAC
EST: CAAATCCCGCTCCTTTCGNCA-GGCTGCTTGCACCGATNACCTGTGTAAT GCTCTTCCCTCTTAAG-CTTGTGCTGCCAACGTCTGTCAATATCAATATACEST: gi|208391626|gb|DC938239.1|DC938239
genomic: CAAATCCCGCTCCTTTCG-CAAGGCTGCTTGCACCGATAACCTGTGTAATgtaagtgttg ... gttgtcccagGCTCTTCC-TCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATAC
EST: CCAAATCCCGCTCCTTTCGCAAGGCTGCTTGCACCGATAACCTGTGTAAT GCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACG
genomic: CCAAATCCCGCTCCTTTCGCAAGGCTGCTTGCACCGATAACCTGTGTAATgtaagtgttg ... gttgtcccagGCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACG
agctctgcatcctgtattattgactggcaatctgaatttcttggcgttgtcccagGCTCTTCCTCTTAAGGCTTGTGCTGCCAACGTCTGTCAATATCAATATACGTACGGTGATCAGTCCAACACCAACGGTGATTTGGCCTTCGAAACGATTT
tattgac putative branch site (score: 2)
ttgtccc putative PPT
tgtattatt TA-rich tract