1 5' 3' | 2 5' 3' | 3 5' 3' |
gcaagtacacggtccagaattgcacctctttgatttcgactttctctttcgtttgccgacaactgtcttgaagaatggctttctgtcgcgttagctctgccgtgctctagtttcacatctctgtggttttgggaagcagtgaagttacggattatttctaataattgagattctttgttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAGGAGGTTTGGACCTTGAAGACGAAGTGGGGCAAAAACGTGAAGGCAGTC
species | Physcomitrella patens |
transcript | PP1S6_398V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCCCAAGTT-ACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCTAGACATAGCTTAEST: gi|100389028|gb|BY952232.1|BY952232
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAAGCTGCTCTTGAGGEST: gi|100390626|gb|BY971381.1|BY971381
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGG
EST: TTGGCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCATTCTCGGACAG GGTTTGCGAAGATTTTCTAAGGGCTGCTCTTGAGGGTCAAEST: gi|162202961|gb|FC380346.1|FC380346
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAA
EST: ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100372986|gb|BY949382.1|BY949382
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TGCCCAAGTTTACCGCCTCTTTATTTCAGCA-TCTCTCAATCTCGGACAG GGATTGCGAAGATATTTCTAA-GGCTGCTCTTGAGGGTCAAGACATAGCTCEST: gi|162162996|gb|FC338178.1|FC338178
genomic: TGCCCAAGTTTACCGCCTCTTTATT-CAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATT-CTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTC
EST: ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|162262874|gb|FC440008.1|FC440008
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100359486|gb|BY984278.1|BY984278
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100418302|gb|BY957354.1|BY957354
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: GCCCAAAGTT-ACCGCCTCTTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATTTTCTAAAAGTTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100362928|gb|BY947599.1|BY947599
genomic: GCCCAA-GTTTACCGCCTCTTT-ATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100389015|gb|BY952219.1|BY952219
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TGCCCCAGTTTACCGCCTCTTTATTCAGNCA-TCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAAGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|162176291|gb|FC352748.1|FC352748
genomic: TGCCCAAGTTTACCGCCTCTTTATTCAG-CAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100387014|gb|BY951413.1|BY951413
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TGCCCAAGTTTACGGCCTCTTTATTTCAGCA-TCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100401895|gb|BY973112.1|BY973112
genomic: TGCCCAAGTTTACCGCCTCTTTATT-CAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|162193845|gb|FC369227.1|FC369227
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|208372162|gb|DC936940.1|DC936940
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100400571|gb|BY954541.1|BY954541
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TGCCCA-GTTTACCGCCTNCTTTATTCAGCA-TCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTGGAGGGTCAAGACATAGCTCAEST: gi|162160190|gb|FC337087.1|FC337087
genomic: -GCCCAAGTTTACCGCCT-CTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|162178312|gb|FC354718.1|FC354718
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: CAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100414540|gb|BY992822.1|BY992822
genomic: CAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|162155505|gb|FC331495.1|FC331495
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|162208390|gb|FC384702.1|FC384702
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAEST: gi|100405466|gb|BY955539.1|BY955539
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: TGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTNCA-TCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGGTCA-GACATAGCTCEST: gi|100377514|gb|BY986282.1|BY986282
genomic: TGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCT-CAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGG-TCAAGACATAGCTC
EST: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
ggaagcagtgaagttacggattatttctaataattgagattctttgttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAGGAGGTTTGGACCTTGAAGACGAAGTGGGGCAAAAACGTGAAGGCAGTC
ttctaat putative branch site (score: 2)
ttctttgttctgcc putative PPT
attatttctaataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtacacggtccagaattgcacctctttgatttcgactttctctttcgtttgccgacaactgtcttgaagaatggctttctgtcgcgttagctctgccgtgctctagtttcacatctctgtggttttgggaagcagtgaagttacggattatttctaataattgagattctttgttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCAGGAGGTTTGGACCTTGAAGACGAAGTGGGGCAAAAACGTGAAGGCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA