1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgctcgaggttgctatggcgagttacttagcagagtgattgtttgttacctatgtgagggcacggtgtggcgagtgcttagtgcttggacgtatggcatcttggattttaacaaggtacagaattgctgatgtcagGGAGTAATGAACAAACCACAACAGGGGAGTCCGTCGCTAACAGGCGGGCAGTCGAGTGGCCAGCAAGTTGGCTCAGGCGCTACATCAAGTCAGCAAGCAG
species | Physcomitrella patens |
transcript | PP1S6_392V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGTTGTGGGCCAGCAGAAAGGGTCTCAGCAAGTCCAACAGGCTGCACAG GGAGTAATGAACAAACCACAACAGGGGAGTCCGTCGCTAACAGGCGGGCAGEST: gi|162231911|gb|FC408777.1|FC408777
genomic: CCGTTGTGGGCCAGCAGAAAGGGTCTCAGCAAGTCCAACAGGCTGCACAGgtatgctcga ... ctgatgtcagGGAGTAATGAACAAACCACAACAGGGGAGTCCGTCGCTAACAGGCGGGCAG
EST: CCGTTGTGGGCCAGCAGAAAGGGTCTCAGCAAGTCCAACAGGCTGCACAG GGAGTAATGAACAAACCACAACAGGGGAGTCCGTCGCTAACAGGCGGGCAG
genomic: CCGTTGTGGGCCAGCAGAAAGGGTCTCAGCAAGTCCAACAGGCTGCACAGgtatgctcga ... ctgatgtcagGGAGTAATGAACAAACCACAACAGGGGAGTCCGTCGCTAACAGGCGGGCAG
tgcttggacgtatggcatcttggattttaacaaggtacagaattgctgatgtcagGGAGTAATGAACAAACCACAACAGGGGAGTCCGTCGCTAACAGGCGGGCAGTCGAGTGGCCAGCAAGTTGGCTCAGGCGCTACATCAAGTCAGCAAGCAG
attttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcgaggttgctatggcgagttacttagcagagtgattgtttgttacctatgtgagggcacggtgtggcgagtgcttagtgcttggacgtatggcatcttggattttaacaaggtacagaattgctgatgtcagGGAGTAATGAACAAACCACAACAGGGGAGTCCGTCGCTAACAGGCGGGCAGTCGAGTGGCCAGCAAGTTGGCTCAGGCGCTACATCAAGTCAGCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG