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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtaataagctcatgtaatcaatcagatgggtactcgggagcttttctgactcttctctagagtaatatgcaggaaaaatgcggatggatcatccggaatgaataccaactagctatcaatgttttgattattgctgcagGGAAAGATAGCTCTAGTGACAGGCGGTGACTCCGGCATAGGTCGTGCCGTGGGCGTGCTCTTCACACGAGAAGGTGCCACAGTGGCCTTCACATATGTGA

Basic information

species Physcomitrella patens
transcript PP1S6_369V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100427649|gb|BY977603.1|BY977603
EST:     CTGTGCCTCGTCACCACGGAACCAACTACAAGGCTGCTGGCAAGTTGAAG                         GGAAAGATAGCTCTAGTGACAGGCGGTGACTCCGGCATAGGTCGTGCCGTG
genomic: CTGTGCCTCGTCACCACGGAACCAACTACAAGGCTGCTGGCAAGTTGAAGgtgcgtaata ... attgctgcagGGAAAGATAGCTCTAGTGACAGGCGGTGACTCCGGCATAGGTCGTGCCGTG
EST: gi|100442466|gb|BY963160.1|BY963160
EST:     CTGTGCCTCGTCACCACGGAACCAACTACAAGGCTGCTGGCAAGTTGAAG                         GGAAAGATAGCTCTAGTGACAGGCGGTGACTCCGGCATAGGTCGTGCCGTG
genomic: CTGTGCCTCGTCACCACGGAACCAACTACAAGGCTGCTGGCAAGTTGAAGgtgcgtaata ... attgctgcagGGAAAGATAGCTCTAGTGACAGGCGGTGACTCCGGCATAGGTCGTGCCGTG
EST: gi|100416309|gb|BY975327.1|BY975327
EST:     CTGTGCCTCGTCACCACGGAACCAACTACAAGGCTGCTGGCAAGTTGAAG                         GGAAAGATAGCTCTAGTGACAGGCGGTGACTCCGGCATAGGTCGTGCCGTG
genomic: CTGTGCCTCGTCACCACGGAACCAACTACAAGGCTGCTGGCAAGTTGAAGgtgcgtaata ... attgctgcagGGAAAGATAGCTCTAGTGACAGGCGGTGACTCCGGCATAGGTCGTGCCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatcatccggaatgaataccaactagctatcaatgttttgattattgctgcagGGAAAGATAGCTCTAGTGACAGGCGGTGACTCCGGCATAGGTCGTGCCGTGGGCGTGCTCTTCACACGAGAAGGTGCCACAGTGGCCTTCACATATGTGA
                                     ttttgat  putative branch site (score: 4)
                                 aatgttttgattatt  TA-rich tract