1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtggccccgactgtgagcatctgtggtagcatggcgttgtgggttggaggcgcattgcgtggaggtggaggggtggtaggaggcgagtgagtgagatttgaggacgagactgacaatgcggcgatgatgttgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
species | Physcomitrella patens |
transcript | PP1S6_313V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|208363096|gb|DC958009.1|DC958009
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|162267721|gb|FC443711.1|FC443711
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: GCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|162246281|gb|FC423639.1|FC423639
genomic: GCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|208359085|gb|DC957833.1|DC957833
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|162232039|gb|FC409113.1|FC409113
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: AAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|162271665|gb|FC448590.1|FC448590
genomic: AAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|162263794|gb|FC439659.1|FC439659
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|162170792|gb|FC347406.1|FC347406
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: GAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|162231613|gb|FC408232.1|FC408232
genomic: GAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|162157170|gb|FC333740.1|FC333740
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: AGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|162233003|gb|FC408410.1|FC408410
genomic: AGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|208357339|gb|DC953719.1|DC953719
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: GAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCNTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|208366912|gb|DC951399.1|DC951399
genomic: GAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCTGAGGACTTCGACAGEST: gi|162194119|gb|FC369462.1|FC369462
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAGEST: gi|208380204|gb|DC927483.1|DC927483
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
EST: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA CTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
genomic: TTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggcc ... tgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
agtgagtgagatttgaggacgagactgacaatgcggcgatgatgttgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
gactgac putative branch site (score: 1081)
ttgtttt putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggccccgactgtgagcatctgtggtagcatggcgttgtgggttggaggcgcattgcgtggaggtggaggggtggtaggaggcgagtgagtgagatttgaggacgagactgacaatgcggcgatgatgttgttttgcagCTATGGGTACGACCCTTTCGGTTTGTCGAAGAAGCCCGAGGACTTCGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC