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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttagtcaaacgcctgctcggcgatccctttgctcgttcattcgcagctcgtcgcaattctcgtggcgctgacgatggcttcgggtgctccgcattgcagCAATTCGACAAGACATATGGCGCAGGGTGGCAGTGTGTCACCGGCGTCGGCTTCGGCTCCTACATCACCCACTCATCGGGCTCCTTTATTCACTTCTGCA

Basic information

species Physcomitrella patens
transcript PP1S6_275V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37843404|gb|BJ601412.1|BJ601412
EST:     ACTCGCACAACGTCACCGACTGCAAGGAGATCGCGTGCTACATCAAGAAG                         CAATTCGACAAGACATATGGCGCAGGGTGGCAGTGTGTCACCGGCGTCGGC
genomic: ACTCGCACAACGTCACCGACTGCAAGGAGATCGCGTGCTACATCAAGAAGgttagttagt ... cgcattgcagCAATTCGACAAGACATATGGCGCAGGGTGGCAGTGTGTCACCGGCGTCGGC
EST: gi|37847311|gb|BJ605319.1|BJ605319
EST:     CTCGCACAACGTCACCGGACTGCAAGGAGATCGCGTGCTACATCAAGAAG                         CAATTCGACAAGACATATGGCGCAGGGTGGCAGTGTGTCACCGGCGTCGGC
genomic: CTCGCACAACGTCACC-GACTGCAAGGAGATCGCGTGCTACATCAAGAAGgttagttagt ... cgcattgcagCAATTCGACAAGACATATGGCGCAGGGTGGCAGTGTGTCACCGGCGTCGGC
EST: gi|18372889|gb|BJ204491.1|BJ204491
EST:     CTCGCACAACGTCACCGACTGCAAGGAGAATCGCGTGCTACATCAAGAAG                         CAATTCGACAAGA
genomic: CTCGCACAACGTCACCGACTGCAAGGAGA-TCGCGTGCTACATCAAGAAGgttagttagt ... cgcattgcagCAATTCGACAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctcgtcgcaattctcgtggcgctgacgatggcttcgggtgctccgcattgcagCAATTCGACAAGACATATGGCGCAGGGTGGCAGTGTGTCACCGGCGTCGGCTTCGGCTCCTACATCACCCACTCATCGGGCTCCTTTATTCACTTCTGCA
                     cgctgac  putative branch site (score: 3)