Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37831379|gb|BJ589391.1|BJ589391EST: AGAAATATGCACGAGACCGATCCTGAGAAAATCGAAGAGCAGAAACAAGC GGCTGCACGAGCATTGTTCAACCACATGTATTATGAAGCAGGTCGTATGGC
genomic: AGAAATATGCACGAGACCGATCCTGAGAAAATCGAAGAGCAGAAACAAGCgtaagttcac ... tattctgcagGGCTGCACGAGCATTGTTCAACCACATGTATTATGAAGCAGGTCGTATGGC
EST:
gi|37822726|gb|BJ580792.1|BJ580792EST: AGAAATATGCACGAGACCGATCNTGAGAAAATCGAAGAGCAGAAACAAGC GGCTGCACGAGCATTGTTCAACCACATGTATTATGAAGCAGGTCGTATGGC
genomic: AGAAATATGCACGAGACCGATCCTGAGAAAATCGAAGAGCAGAAACAAGCgtaagttcac ... tattctgcagGGCTGCACGAGCATTGTTCAACCACATGTATTATGAAGCAGGTCGTATGGC
EST:
gi|67578948|gb|BJ951099.1|BJ951099EST: AGAAATATGCACGAGACCGATCCTGAGAAAATCGAAGAGCAGAAACAAGC GGCTGCACGAGCATTGTTCAACCACATGTATTATGAAGCAGGTCGTATGGC
genomic: AGAAATATGCACGAGACCGATCCTGAGAAAATCGAAGAGCAGAAACAAGCgtaagttcac ... tattctgcagGGCTGCACGAGCATTGTTCAACCACATGTATTATGAAGCAGGTCGTATGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttggtggacctagttatgaaacatcatattgaatatatcttgatattctgcagGGCTGCACGAGCATTGTTCAACCACATGTATTATGAAGCAGGTCGTATGGCTGCAGAGCAAGCCGAGAATGAGCTAATAAAGGAATCGCTGCTGGGGTTG
tcttgat putative branch site (score: 4)
atattgaatatatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcacttgtcattcaaaatctttgcaccatctttgctgcatacatgtactttggatcggttggtggacctagttatgaaacatcatattgaatatatcttgatattctgcagGGCTGCACGAGCATTGTTCAACCACATGTATTATGAAGCAGGTCGTATGGCTGCAGAGCAAGCCGAGAATGAGCTAATAAAGGAATCGCTGCTGGGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT