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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagcatattgtctgggttttagctccaattcacccaattaaggtcataaagttcgtcaaaatttctagtcttcattatccctgctgctgtgttgctgcagATTGTCCTAGTTGGGCACGATCTGGGAGGCCTGAGCGTGACATATGCAATGGAACACTTTCACAAGAATATTTCGGTGGCTGTCTTCATTGCCGCCATGA

Basic information

species Physcomitrella patens
transcript PP1S69_241V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167892|gb|FC344830.1|FC344830
EST:     ACAACCAGCCTTTGGTCGAATTCATGCAGACGCTCGCTCCCAACGAGAGG                         ATTGTCCTAGTTGGGCACGATCTGGGAGGCCTGAGCGTGACATATGCAATG
genomic: ACAACCAGCCTTTGGTCGAATTCATGCAGACCCTCGCTCCCAACGAGAGGgttagtacaa ... gttgctgcagATTGTCCTAGTTGGGCACGATCTGGGAGGCCTGAGCGTGACATATGCAATG
EST: gi|100441069|gb|BY980690.1|BY980690
EST:     ACAACCAGCCTTTGGTCGAATTCATGCAGACCCTCGCTCCCAACGAGAGG                         ATTGTCCTAGTTGGGCACGATCTGGGAGGCCTGAGCGTGACATATGCAATG
genomic: ACAACCAGCCTTTGGTCGAATTCATGCAGACCCTCGCTCCCAACGAGAGGgttagtacaa ... gttgctgcagATTGTCCTAGTTGGGCACGATCTGGGAGGCCTGAGCGTGACATATGCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagttcgtcaaaatttctagtcttcattatccctgctgctgtgttgctgcagATTGTCCTAGTTGGGCACGATCTGGGAGGCCTGAGCGTGACATATGCAATGGAACACTTTCACAAGAATATTTCGGTGGCTGTCTTCATTGCCGCCATGA
            aaaatttcta  TA-rich tract