Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgatgttctgagagagaagttattagtgttttgttaggagttttgtttgtgatttatcacaatgtggactacgtggaaaagtgatcataactgctcagattcagtgcgcaagtcttcatttcgcgttggtggtaatttgactaaagatctatgggaatggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG

Basic information

species Physcomitrella patens
transcript PP1S67_176V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S67_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os01g11110.2 (Oryza sativa), 3'ss of exon 2
gtacgtgatgttctgagagagaagttattagtgttttgttaggagttttgtttgtgatttatcacaatgtggactacgtggaaaagtgatcataactgctcagattcagtgcgcaagtcttcatttcgcgttggtggtaatttgactaaagatctatgggaatggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG
                                                                                         | |       | |   |  ||       | || | |  |  | | |  |  | |||  || |   |       || |   |||||||| |||||||| || |||||||| ||||||||||| || |  || | ||  ||||   |||| |  ||  | || |||||| ||
----------------------------------------------------------------------------------------gtgacgctgctttaccctttgttaattcttgttaaatgtgtttggattattgtctgatcaatgcattcc-----tgattttagGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAG

upper sequence: PP1S67_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 2
gtacgtgatgttctgagagagaagttattagtgttttgttaggagttttgtttgtgatttatcacaatgtggactacgtggaaaagtgatcataactgctcagattcagtgcgcaagtcttcatttcgcgttggtggtaatttgactaaagatctatgggaatggt---accagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG
                                                                                     || |  |  | || |    ||  ||||       ||||||| | ||  |   | ||||   ||   || |  |||  ||||     |||||| || ||||| ||||| ||||| || |||||||||||||| || || |||||||| || ||||| || ||| | ||||| || |||
-------------------------------------------------------------------------------------gtaaggaata-tgtttgagtttggtgcattttatttcattt-gagt--gctttgatttttgtagtaatttcagggtttggttgtttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265043|gb|FC440922.1|FC440922
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|37836964|gb|BJ594972.1|BJ594972
EST:     TGATTCCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TGATT-CCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|67698866|gb|BJ959099.1|BJ959099
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162242420|gb|FC416150.1|FC416150
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|18338245|gb|BJ170269.1|BJ170269
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|37824917|gb|BJ582983.1|BJ582983
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|37824545|gb|BJ582611.1|BJ582611
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162230671|gb|FC406094.1|FC406094
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|18337976|gb|BJ170000.1|BJ170000
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|7067273|gb|AW497128.1|AW497128
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162277839|gb|FC454302.1|FC454302
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208396682|gb|DC929033.1|DC929033
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162224456|gb|FC399832.1|FC399832
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|18338543|gb|BJ170567.1|BJ170567
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|67699804|gb|BJ960037.1|BJ960037
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208367542|gb|DC943945.1|DC943945
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162174284|gb|FC350667.1|FC350667
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|37827194|gb|BJ585206.1|BJ585206
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208357329|gb|DC949931.1|DC949931
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162167056|gb|FC342518.1|FC342518
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162260947|gb|FC438004.1|FC438004
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162174283|gb|FC350666.1|FC350666
EST:     GAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: GAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162259102|gb|FC436409.1|FC436409
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|67698970|gb|BJ959203.1|BJ959203
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162265042|gb|FC440921.1|FC440921
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|37825061|gb|BJ583127.1|BJ583127
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|67691537|gb|BJ951770.1|BJ951770
EST:     TTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208360989|gb|DC957496.1|DC957496
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208397882|gb|DC916189.1|DC916189
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208365472|gb|DC954713.1|DC954713
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162162877|gb|FC338113.1|FC338113
EST:     TTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208364787|gb|DC943647.1|DC943647
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208382964|gb|DC927714.1|DC927714
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162242247|gb|FC418447.1|FC418447
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208346498|gb|DC917451.1|DC917451
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162241145|gb|FC414163.1|FC414163
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208349647|gb|DC917825.1|DC917825
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162229444|gb|FC405830.1|FC405830
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208387528|gb|DC953270.1|DC953270
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208356273|gb|DC957349.1|DC957349
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162230670|gb|FC406093.1|FC406093
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208387631|gb|DC953373.1|DC953373
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208366430|gb|DC943906.1|DC943906
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|22492501|gb|BU052424.1|BU052424
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|18333689|gb|BJ165704.1|BJ165704
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208371040|gb|DC955916.1|DC955916
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208365818|gb|DC951053.1|DC951053
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208392097|gb|DC946165.1|DC946165
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162259101|gb|FC436408.1|FC436408
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208386680|gb|DC929126.1|DC929126
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208351274|gb|DC921553.1|DC921553
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208397909|gb|DC916664.1|DC916664
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162229445|gb|FC405831.1|FC405831
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162242248|gb|FC418448.1|FC418448
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|37853249|gb|BJ611257.1|BJ611257
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162242421|gb|FC416151.1|FC416151
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162210235|gb|FC386421.1|FC386421
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162277838|gb|FC454301.1|FC454301
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208393871|gb|DC946109.1|DC946109
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208366539|gb|DC954847.1|DC954847
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|37839299|gb|BJ597307.1|BJ597307
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208363087|gb|DC946942.1|DC946942
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162173997|gb|FC350512.1|FC350512
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208366918|gb|DC951405.1|DC951405
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162173996|gb|FC350511.1|FC350511
EST:     CGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: CGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162167055|gb|FC342517.1|FC342517
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208382673|gb|DC919827.1|DC919827
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|37828810|gb|BJ586822.1|BJ586822
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208375111|gb|DC944850.1|DC944850
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162243339|gb|FC417040.1|FC417040
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|162260946|gb|FC438003.1|FC438003
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208349293|gb|DC918029.1|DC918029
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|67575400|gb|BJ948224.1|BJ948224
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208364977|gb|DC947119.1|DC947119
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208382373|gb|DC927907.1|DC927907
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208371871|gb|DC951703.1|DC951703
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
EST: gi|208375272|gb|DC945014.1|DC945014
EST:     TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGAT                         GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG
genomic: TTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 74

AGGAGCTGTCTAAGATATGTCAGGACATATTGACCATTATCGATGAGCACTTGATTCCATCGTCGAGCACTGGCGAGTCAACAGTCTTTTATTACAAGATgtacgtgatg ... atggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttcatttcgcgttggtggtaatttgactaaagatctatgggaatggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG
                           gactaaa  putative branch site (score: 74)
                     taatttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtgatgttctgagagagaagttattagtgttttgttaggagttttgtttgtgatttatcacaatgtggactacgtggaaaagtgatcataactgctcagattcagtgcgcaagtcttcatttcgcgttggtggtaatttgactaaagatctatgggaatggtaccagGAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG