1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atctccattttttctgctcaaatcactgctttattgctgccttttgttttaaagtgaaggattaaatgttgacgtgttgaggttctcctctgtgtggcagCTAGGTATAGCTTATGACAAATTTATAAGGACAACCGACAGTCATCACGAGACTTTAGTAGATGAATTTTATAAGCGTGTTGAAGCGAAAGGAGACATAT
species | Physcomitrella patens |
transcript | PP1S66_139V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGAACATTGCGATGCTGTCGCTGCAGAATATCAACTTTTGTGGAAAGAA CTAGGTATAGCTTATGACAAATTTATAAGGACAACCGACAGTCATCACGAGEST: gi|67508407|gb|BJ941274.1|BJ941274
genomic: AGGAACATTGCGATGCTGTCGCTGCAGAATATCAACTTTTGTGGAAAGAAgtaagagaaa ... tgtgtggcagCTAGGTATAGCTTATGACAAATTTATAAGGACAACCGACAGTCATCACGAG
EST: AGGAACATTGCGATGCTGTCGCTGCAGAATATCAACTTTTGTGGAAAGAA CTAGGTATAGCTTATGACAAATTTATAAGGACAACCGACAGTCATCACGAGEST: gi|162184036|gb|FC359406.1|FC359406
genomic: AGGAACATTGCGATGCTGTCGCTGCAGAATATCAACTTTTGTGGAAAGAAgtaagagaaa ... tgtgtggcagCTAGGTATAGCTTATGACAAATTTATAAGGACAACCGACAGTCATCACGAG
EST: AGGAACATTGCGATGCTGTCGCTGCAGAATATCAACTTTTGTGGAAACAA CTAGGTATAGCTTATGACAAATTTATAAGGACAACCGACAGTCATCACGAG
genomic: AGGAACATTGCGATGCTGTCGCTGCAGAATATCAACTTTTGTGGAAAGAAgtaagagaaa ... tgtgtggcagCTAGGTATAGCTTATGACAAATTTATAAGGACAACCGACAGTCATCACGAG
gttttaaagtgaaggattaaatgttgacgtgttgaggttctcctctgtgtggcagCTAGGTATAGCTTATGACAAATTTATAAGGACAACCGACAGTCATCACGAGACTTTAGTAGATGAATTTTATAAGCGTGTTGAAGCGAAAGGAGACATAT
tgttgac putative branch site (score: 4)
ttctcctctgt putative PPT
attaaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctccattttttctgctcaaatcactgctttattgctgccttttgttttaaagtgaaggattaaatgttgacgtgttgaggttctcctctgtgtggcagCTAGGTATAGCTTATGACAAATTTATAAGGACAACCGACAGTCATCACGAGACTTTAGTAGATGAATTTTATAAGCGTGTTGAAGCGAAAGGAGACATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - -ctgctca