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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctgtcaacatacaccaacgttgattgtgtgttcatccctgtgtcttcttttgagggttttctggacgggggctattttctattcattacaagaaaatctgattatgtgttaagcttcacttatttgatacgttttatattaaacgtgtcacttgtgtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTATTTCAATTCACGTCACATGTTAAAGGGGTGCATCAACGATTCAAATTGTA

Basic information

species Physcomitrella patens
transcript PP1S65_2V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67572811|gb|BJ945635.1|BJ945635
EST:     TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG                         CCTCCAAATGTACATGGTCGGAAGA
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGA
EST: gi|100388923|gb|BY988799.1|BY988799
EST:     TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG                         CCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
EST: gi|100364396|gb|BY984591.1|BY984591
EST:     TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG                         CCTCCCAATGTACATGGTCGGAAGAAGGGTGTTTTAGTTGGCATCAATTAT
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
EST: gi|67507918|gb|BJ940793.1|BJ940793
EST:     TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG                         CCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
EST: gi|100413675|gb|BY974934.1|BY974934
EST:     TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG                         CCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
EST: gi|67569388|gb|BJ942212.1|BJ942212
EST:     TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG                         CCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcttcacttatttgatacgttttatattaaacgtgtcacttgtgtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTATTTCAATTCACGTCACATGTTAAAGGGGTGCATCAACGATTCAAATTGTA
           atttgat  putative branch site (score: 5)
         ttatttgatacgtttt  TA-rich tract