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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatcttaagctatcacacagtactgtcgtttcatttatcagtgcaccacggtcttcaaaaatcatgtccagacagaatgcgaaactggatattagtggcgcgattatattgatcgtgaggatgtccgaattatttttttagGTTGAAACGAAGGTTGAAAAGAAAGTGAAAGAAAAGATACTGCTCAACAATGTGACAGCGCGCGCCAATCACAGCGAAGTTCTCGCTATTGCAGGGCCAT

Basic information

species Physcomitrella patens
transcript PP1S63_27V6.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatattagtggcgcgattatattgatcgtgaggatgtccgaattatttttttagGTTGAAACGAAGGTTGAAAAGAAAGTGAAAGAAAAGATACTGCTCAACAATGTGACAGCGCGCGCCAATCACAGCGAAGTTCTCGCTATTGCAGGGCCAT
                    tattgat  putative branch site (score: 3)
                                           ttattttttt  putative PPT
                                         aattattttttta  TA-rich tract