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...cgtttctgatcacgatcaaaacgttttcaaatttataggatacttatgcctgtatccagtagatcaaattttaacaagctgatcgtttcatttgcctcagACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCGTAAATCAGTTGCTTGGCATTAAAGGCGCTTCAGCTGAAACG
species | Physcomitrella patens |
transcript | PP1S5_30V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCTCTCAGAATAAGGGCAGCTGCAAAAGACACCGAGGAAG ACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCGEST: gi|162163836|gb|FC340058.1|FC340058
genomic: GTCCTCTCAGAATAAGGGCAGCTGCAAAAGACACCGAGGAAGgtaatatctg ... tttgcctcagACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCG
EST: GTCCTCTCAGAATAAGGGCAGCTGCAAAAGACACCGAGGAAG ACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCGEST: gi|208380750|gb|DC903270.1|DC903270
genomic: GTCCTCTCAGAATAAGGGCAGCTGCAAAAGACACCGAGGAAGgtaatatctg ... tttgcctcagACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCG
EST: GTCCTCTCAGAATAAGGGCAGCTGCAAAAGACACCGAGGAAG ACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCGEST: gi|67575294|gb|BJ948118.1|BJ948118
genomic: GTCCTCTCAGAATAAGGGCAGCTGCAAAAGACACCGAGGAAGgtaatatctg ... tttgcctcagACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCG
EST: GTCCTCTCAGAATAAGGGCAGCTGCTAAAGACACCGANGAAG ACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCACCCGEST: gi|18352263|gb|BJ184317.1|BJ184317
genomic: GTCCTCTCAGAATAAGGGCAGCTGCAAAAGACACCGAGGAAGgtaatatctg ... tttgcctcagACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCG
EST: GTCCTCTCAGAATAAGGGCAGCTGCAAAAGACACCGAGGAAG ACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCG
genomic: GTCCTCTCAGAATAAGGGCAGCTGCAAAAGACACCGAGGAAGgtaatatctg ... tttgcctcagACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCG
atgcctgtatccagtagatcaaattttaacaagctgatcgtttcatttgcctcagACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCGTAAATCAGTTGCTTGGCATTAAAGGCGCTTCAGCTGAAACG
tttcattt CT-rich tract
tagatcaaattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtttctgatcacgatcaaaacgttttcaaatttataggatacttatgcctgtatccagtagatcaaattttaacaagctgatcgtttcatttgcctcagACAAGGTCTCTAAGTTGGTGGATGCGGCTCCAAAAGCAGCTGGCTCAGCCGTAAATCAGTTGCTTGGCATTAAAGGCGCTTCAGCTGAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA