Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC

Basic information

species Physcomitrella patens
transcript PP1S5_176V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os12g14100.1 (Oryza sativa), 3'ss of exon 1
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttg-cggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
                   |   |||| | | |||   |  | |  | ||   || || ||   || |  |||  |  |||    || |   | ||    || ||||| ||||| |||| || | || |  |||||||| ||||||||||||||||||| |||||||||||||| |||||||||   ||   ||||  ||| |||
------------------gtacataattcat-tcatcatttctccttctc-catttcatttcatcgtccatgg--atgagtgttcgattttgtttttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGTGCGTGCCGGGGCGGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os08g03350.1 (Oryza sativa), 3'ss of exon 2
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgca-gtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
           ||| ||  |     |||    |||   |||         |     || |   |   ||        |  |||| ||||   |       ||||||||||| ||  | | ||||||| |  |||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||    |||||||| |||
----------gtca-gtcctact--atcttcttcatcttcatctgaacgaagaacacacgaacgaaccaagaaattaatctaactgaattcttgaatttttgcagGGGACCTGGCATCGCGGTGCTGATCCTGTCATGGATCATCACGCTCTACACGCTGTGGCAGATGGTGGAGATGCACGAGATGGTGCCCGGGAAGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G180659_T02 (Zea mays), 3'ss of exon 3
----------gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcaca-tgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
          ||  | ||     | |  |  |  |    |       |  ||| |  |  |     | |    |   |       |  || | |  ||| | ||   || |||||||| || ||  | | ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||   |||||||| |||
gtacgtacgtgtccgagccatggatggatgctggagagagctcggctggtacatatatatagtcgtctgacgaccctaccccatccccgtcatgtcatgtcgatctgcactgcagGGGCCCTGGCATCGCGGTGCTGGTGGTGTCGTGGGTGATCACGCTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGATGGTCCCCGGGAAGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G046743_T01 (Zea mays), 3'ss of exon 2
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
||  |  | |  ||| | ||  |     ||  | |  || ||   |          ||         |          ||     ||||||     | ||||||||| || ||  | |  |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||| |||
gtacgcacacggcacatcttcgcg----cgcgttacggttacggcg------accacaaacaaaatgaacttttttttgttgtcaaatggca---tatatgcagGGGCCCTGGCATCGCCGTGCTGGTGGTGTCGTGGGTGATCACGCTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGATGGTGCCCGGAAAGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G127338_T02 (Zea mays), 3'ss of exon 1
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
    | ||          |||     |  ||  | | |||  || |  ||     || | ||     ||  |   ||  | | |  |||   || || ||||||||| || ||  | | ||||||| || |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||  ||| ||||| |||
----gtgcgtacgctagcttgctagctgtgtgcctgtgtctgactgactctgagcgc-gcttaaattagatgtatcatatcatgccatg--catgcatatgcagGGGCCCCGGCATCGCGGTGCTGCTGCTGTCGTGGATCATCACGCTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGATGGTCCCGGGCAAGCGCTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G127328_T01 (Zea mays), 3'ss of exon 2
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
        | | ||||  |     ||||        |||||  || || |||  ||  | | |  | | | | ||  | |      |  ||| |    || ||||||  | ||  |   | |  || |  |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||   ||||||||| |||
-------gtacgcacgcatcaatcaatc--------agtcat-catttccattctgatgataggagtacttgtcatgaatgtaactactgctgt--ggattcagGGGTGCCGGCATCACGATCATGCTCCTGTCGTGGGTGATCACGCTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGATGGTGCCGGGGAAGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G149216_T01 (Zea mays), 3'ss of exon 2
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgc-ggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
 |||         |||     |  | ||  | |||||   | | | | | | |  |      || |  |   ||  ||  |    || |         ||  |||||| || ||  | | |||| || |  |||||||||| ||||| || |||||||| |||||||||||||| ||||||||||||||    |||||||| |||
-tgattcaattgtacgagcgattaactcgttgtcaga--taaagattattagggggtcacgggcagataaatggttca--ttgttgattattggcgtgcacacagGGGCCCTGGCATCGCGGTGATGATCCTGTCGTGGATAATCACCCTATACACGCTATGGCAGATGGTGGAGATGCACGAGATGGTGCCTGGGAAGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G429322_T01 (Zea mays), 3'ss of exon 2
----------------------------------------gtgagggctcc-tcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
                                         |  ||||||   || |  | |  |  |  | ||    ||  ||  | |    |      ||     |    ||| | |  | ||   |  | |||| ||    ||||   ||| ||   |||||||||  |||||||| | |||||| |||||||||| |||||||||||||| |||||||||   ||   ||||||||| |||
gtccgtctcgtcatccaccatatatatcttccatccatgcatatgggctctgccaagcatagatt--ttgggctttcggt-gcatggctcgtcgccttccttcctaccttccggc-cgatcaccgagttttcgattccca----gGGGCGTGGGCGTCACGGTGCTGGTCCTGTCGTGGGTCATCACGGTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGTGCGTGCCGGGGAAGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G127342_T01 (Zea mays), 3'ss of exon 2
-------------gtgagggctcctcacgttt-tgtctaatcc--gtctcagagtcacacagtttcatgt---tgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
             ||||      |   | | | | |||  |||  | | | |       ||  | | | |   |||    | |  || |   ||   |   ||   |  | | |  ||  ||||||||| ||  | | ||||||| || |||||||| |  |||| ||||||||  | |||||||||||||| |||||||||||||||   |||||||| |||
gtacgtgtgagttgtgacactgtcatgcatatatctctgctccctgccccggcacactgcatatgcgtatgcatgccacattcttcaattcacaagggcgtcgtcgtcacgacttgcacacagGGGACCTGGCATCGCGGTGCTGATGCTGTCGTGGGTCGTCACCCTGTACACCATGTGGCAGATGGTGGAGATGCACGAGATGGTCCCCGGGAAGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G127294_T01 (Zea mays), 3'ss of exon 2
----gtgagg-gctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggct--attcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
    ||  |  |  |  | |||  | |   |  |    ||  |    |  | | |||    ||   | |  | || |   |   |  |    | |    ||   | |||||||     || ||   |||||||||  ||| ||||   |||||||| |||||||| |||||||||||||| |||||||||   |||  ||||||||| |||
gtccgtccgtcgtccgactcgtgctctactaatcacaccatcgatcgatcgatccatcagccatcatccatctgtcgatccggttctcaatctcgacggatcgccttgcagGGAGGTCGGCGTCACGGTGCTGGTTCTGTTGTGGGCCATCACGCTCTACACGCTGTGGCAGATGGTGGAGATGCACGAGTGCGTCCCGGGGAAGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G175321_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------gtgagggctcctcacgttttgtcta-atccgtc-tcagagtcacacagtttcat--gttgcagtttgcggcagtgggcacaagt-aacggaatggctattcacat----gcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
                                                  |  | |     |   |  |||  |  ||| ||| ||    ||   |  ||| |    | |  |  |       |  |||   || |||| | |  |    | |||    ||||||| || || ||||| |   ||||  |||| ||| ||||||| ||||||||||| ||||||||||| || |||||||||   |||   ||||||||||||
gtacgtggcatccatctgatctggtcttaattgttgtcctcgcctcgatcggcatgcaatattgtgccttgcatgcatctgtcgtcgcgatcgatccatttaactgatcgatggatatatggatctgcatgcgtgaacgaactaacacaccgcatgcgtgcagGGGTCCCGGCGTGGTCGCCATGGTCCTGTCTTGGGTGATCACCCTGTACACGCTGTGGCAGATGGTCGAGATGCACGAGTGCGTCCCCGGGAAGCGTTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G114523_T01 (Zea mays), 3'ss of exon 1
gtgagggctcctcacgttttgtctaa---tccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacgga-----atggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
||  ||   ||    |  ||| || |   |||   |    | ||  || |  |  | ||      || |   |     |  ||  |        || |  ||   |||||||||| || ||  |||||| |||| ||| |||||||  ||||||||||||||||||  | | | || | ||  ||||||||   ||    ||   ||| |||
gtatggtaaccgactggattgactgaccctccactttgacggcatgcaatggctcgctgactcgagcagtgtttctttcttgttgcttggtttcatcgtcatcatcatgcagGGGCCCCGGGATGGTGGCGCTGCTGGCGTCGTGGGGGATCACGCTGTACACGCTGCGTCTGCTGATCGAGCTGCACGAGTGCGTGCCCGGCGTGCGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G67640.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgagggctcctcacgttttgtctaa-tccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
             |  |    ||||  | | | |   | |  | || |   |  |  |  | | |  |  |    |  | ||    | |   | || |   |||||||||| ||||||    |  || |  |||| ||| |||| ||  | ||||| || |||||||||||| ||||||||||||||||    |||||| | |||
---------gtatatatccaatctagctacatatataaatatctcattagaaaatctctatataca-cgttcaatattaatattacactcaattttgatg-gcagGGGACCTGGAGTGACAATAATGATAATGTCATGGCTGATAACATTCTACACACTATGGCAGATGGTGCAAATGCACGAGATGGTTCCAGGGAAGAGGTTC

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ10950 (Selaginella moellendorffii), 3'ss of exon 2
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaac----ggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
       ||  ||  || | | |    |  ||    ||   ||   | |         |||| |  ||       |||| |||       ||   | ||    | |||||||||||| ||  | || || ||  |||||||| ||||||| || |||||||| ||||| ||||||||||||||||| ||||||  ||||||| | || 
----accctagtcgtgtgtcgcccg--caatcctccagctccatgttcttgacaaatggttttc--caacttttccaagcaactttaaagatttttttttcgttccagGGGACCGGGGGTCCTTGTTCTTGTACTGTCGTGGGTGATCACACTCTACACGCTGTGGCAAATGGTGGAAATGCACGAAATGGTCCCGGGGAAGAGATTT

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ25874 (Selaginella moellendorffii), 3'ss of exon 2
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaac-----ggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
      |   | | ||   |    ||    | ||| || | ||   | |         |||| |  ||       |||| |||      || | | | |||   | ||||||||| || ||  |||| || ||  | |||||| ||||||| || |||||||| ||||| ||||||||||||||||| ||||||  ||||||| | || 
------gtgtcacccgcaatcctcaagaactttcacagccccatgttcttgacaaatcgttttc--caacttttccaagcaactttaaagatttgtttttcgt-tccagGGGACCAGGGGTCCTGGTTCTTGTACTCTCGTGGGTGATCACACTCTACACGCTGTGGCAAATGGTGGAAATGCACGAAATGGTCCCGGGGAAGAGATTT

upper sequence: PP1S5_176V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ10949 (Selaginella moellendorffii), 3'ss of exon 1
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
                                                | | |||  | |  |    |  |   |||  |    |  |  ||       | |||||| || ||  |  | |||||  |  | || ||||   ||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| ||||| |||
-----------------------------------------------gtaacgttcgaat--gttataacgtctacattttttagggtt-cttcgtttttccagGGGGCCTGGGATCTTCGTGCTCCTCCTCTCCTGGACCGTCACGCTCTACACGCTATGGCAAATGGTGGAGATGCACGAGATGGTGGAGGGCAAGCGCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18353203|gb|BJ185258.1|BJ185258
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|100385085|gb|BY987548.1|BY987548
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|18330672|gb|BJ162678.1|BJ162678
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|208374775|gb|DC932044.1|DC932044
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|67702897|gb|BJ963130.1|BJ963130
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|67716918|gb|BJ967177.1|BJ967177
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|67709502|gb|BJ965318.1|BJ965318
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|67709253|gb|BJ965069.1|BJ965069
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|162250920|gb|FC425742.1|FC425742
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|162151884|gb|FC328130.1|FC328130
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|100439025|gb|BY980055.1|BY980055
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGGACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|162182883|gb|FC358954.1|FC358954
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|67717718|gb|BJ967977.1|BJ967977
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|67709482|gb|BJ965298.1|BJ965298
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|100452001|gb|CJ975050.1|CJ975050
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGNATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|100402500|gb|BY954867.1|BY954867
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|18348093|gb|BJ180140.1|BJ180140
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|208384180|gb|DC911288.1|DC911288
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|100443650|gb|BY963747.1|BY963747
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|162260735|gb|FC435387.1|FC435387
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|100450396|gb|CJ974242.1|CJ974242
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|100385223|gb|BY950815.1|BY950815
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|100399790|gb|BY972894.1|BY972894
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
EST: gi|67717986|gb|BJ968245.1|BJ968245
EST:     GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATG                         GGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC
genomic: GTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 10

ATCGCAAAGCCAAATGGTGGTACTCCGCCTTCCACAATGTTACCGCAATGGTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctc ... tcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC
                           aagtaac  putative branch site (score: 10)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagggctcctcacgttttgtctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcagGGGACCGGGAGTGGTGGTGCTGGTGGTGTCGTGGATGATCACGCTGTACACGCTCTGGCAGATGGTGGAAATGCACGAGATGGTCGAGGGGAAGCGTTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG