1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggcgtgcgtctttcgatcgtgcttccgtttaaaattgcatttgtttctttctcgttaagatctgtgagaatttagtatgaaacgactgggtttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAG
species | Physcomitrella patens |
transcript | PP1S56_71V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAG GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCGEST: gi|162153286|gb|FC329068.1|FC329068
genomic: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
EST: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAG GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCGEST: gi|162244129|gb|FC419806.1|FC419806
genomic: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
EST: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAG GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCGEST: gi|162172204|gb|FC348769.1|FC348769
genomic: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
EST: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAG GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCGEST: gi|37843068|gb|BJ601076.1|BJ601076
genomic: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
EST: GTAATCAAAGCTTGCCCTGAATTGCCAG GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
genomic: GTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
tctttctcgttaagatctgtgagaatttagtatgaaacgactgggtttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAG
tttctgtc CT-rich tract
aatttagtatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcgtgcgtctttcgatcgtgcttccgtttaaaattgcatttgtttctttctcgttaagatctgtgagaatttagtatgaaacgactgggtttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG