1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctaggtgggtttttaacgtgcgagagttcgcactaaaacgttgattcaaccaagagagagttgcggttgtcattttacaatattttgatgcatctgcagGATGAATATGCTGCGGGGACTGAGCTTTTCCCTATTCCTCATCAACCTAGCAGCAATTCTCGAAAGAGCTGACGAATCTCTACTCCCAGCTGTTTACAAG
species | Physcomitrella patens |
transcript | PP1S55_231V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCAAGTGCACCCTATCCTTCCGCTATACCAACTGAGCTACGACGGCCG GATGAATATGCTGCGGGGACTGAGCTTTTCCCTATTCCTCATCAACCTAGCEST: gi|208392202|gb|DC929477.1|DC929477
genomic: CGCCAAGTGCACCCTATCCTTCCGCTATACCAACTGAGCTACGACGGCCGgtaagtggtc ... gcatctgcagGATGAATATGCTGCGGGGACTGAGCTTTTCCCTATTCCTCATCAACCTAGC
EST: CGCCAAGTGCACCCTATCCTTCCGCTATACCAACTGAGCTACGACGGCCG GATGAATATGCTGCGGGGACTGAGCTTTTCCCTATTCCTCATCAACCTAGC
genomic: CGCCAAGTGCACCCTATCCTTCCGCTATACCAACTGAGCTACGACGGCCGgtaagtggtc ... gcatctgcagGATGAATATGCTGCGGGGACTGAGCTTTTCCCTATTCCTCATCAACCTAGC
ttcaaccaagagagagttgcggttgtcattttacaatattttgatgcatctgcagGATGAATATGCTGCGGGGACTGAGCTTTTCCCTATTCCTCATCAACCTAGCAGCAATTCTCGAAAGAGCTGACGAATCTCTACTCCCAGCTGTTTACAAG
ttttgat putative branch site (score: 4)
attttacaatattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaggtgggtttttaacgtgcgagagttcgcactaaaacgttgattcaaccaagagagagttgcggttgtcattttacaatattttgatgcatctgcagGATGAATATGCTGCGGGGACTGAGCTTTTCCCTATTCCTCATCAACCTAGCAGCAATTCTCGAAAGAGCTGACGAATCTCTACTCCCAGCTGTTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT