1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gggaatacttggcaccattgtggtggatcgcatgcaatatacgccgtgaattcaaaaattgacgggtggacggatatgaaagcaaatgatggtttttcagGTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGCTTCAAGTTAGATGCAGTTGAGATAAAACGGCGCAAAAGCTGGACTTCTT
species | Physcomitrella patens |
transcript | PP1S55_214V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGAGCTTAGAATGGCAG GTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGCEST: gi|208378885|gb|DC927587.1|DC927587
genomic: GCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGAGCTTAGAATGGCAGgtatgtcgct ... ggtttttcagGTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGC
EST: TCCAGCTGTGAGAGCTTAGAATGGCNG GNTGATGAATTGGATAAGGCAACTTTTGNTGCAGAGANGGATCCTGCTCGCEST: gi|18355793|gb|BJ187852.1|BJ187852
genomic: TCCAGCTGTGAGAGCTTAGAATGGCAGgtatgtcgct ... ggtttttcagGTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGC
EST: GCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGAGCTTAGAATGGCAG GTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGCEST: gi|208352906|gb|DC913832.1|DC913832
genomic: GCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGAGCTTAGAATGGCAGgtatgtcgct ... ggtttttcagGTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGC
EST: GCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGAGCTTAGAATGGCAG GTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGCEST: gi|208388648|gb|DC941489.1|DC941489
genomic: GCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGAGCTTAGAATGGCAGgtatgtcgct ... ggtttttcagGTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGC
EST: GCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGAGCTTAGAATGGCAG GTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGC
genomic: GCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGAGCTTAGAATGGCAGgtatgtcgct ... ggtttttcagGTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGC
gtgaattcaaaaattgacgggtggacggatatgaaagcaaatgatggtttttcagGTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGCTTCAAGTTAGATGCAGTTGAGATAAAACGGCGCAAAAGCTGGACTTCTT
aattgac putative branch site (score: 15)
tttttc putative PPT
ttcaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggaatacttggcaccattgtggtggatcgcatgcaatatacgccgtgaattcaaaaattgacgggtggacggatatgaaagcaaatgatggtttttcagGTTGATGAATTGGATAAGGCAACTTCTGTTGCAGAGAAGGATCCTGCTCGCTTCAAGTTAGATGCAGTTGAGATAAAACGGCGCAAAAGCTGGACTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - cgcatgc