Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgcttccttactcgcttctttctgggaattcactttagattgccttgctctgctgattttcatgttgtattttgtcaagaaatccctggattgatttacgtgtatgtttgatgagatgtgttgtctttgtggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGGATCCCTCACTCAAGCCTCCACTTGCCGCGTGGGCTCCTTCCAGGGTGAG

Basic information

species Physcomitrella patens
transcript PP1S55_204V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18374961|gb|BJ206539.1|BJ206539
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162277484|gb|FC453427.1|FC453427
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162185828|gb|FC362384.1|FC362384
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162162654|gb|FC338956.1|FC338956
EST:     GTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|40781590|gb|AJ583520.1|AJ583520
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTTGCAGCACGCCAATTACTTCG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCG-TGCAGCACGCCAATTACTTCG
EST: gi|18368590|gb|BJ200675.1|BJ200675
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18358504|gb|BJ190563.1|BJ190563
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18365489|gb|BJ197566.1|BJ197566
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18366418|gb|BJ198497.1|BJ198497
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162249068|gb|FC421190.1|FC421190
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162155272|gb|FC331729.1|FC331729
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18366708|gb|BJ198787.1|BJ198787
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162191433|gb|FC368190.1|FC368190
EST:     CTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: CTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18328260|gb|BJ160264.1|BJ160264
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|100367888|gb|BY984805.1|BY984805
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18372361|gb|BJ203963.1|BJ203963
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162194084|gb|FC370259.1|FC370259
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18364344|gb|BJ196417.1|BJ196417
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACC
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACC
EST: gi|18368470|gb|BJ200555.1|BJ200555
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAANGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18371540|gb|BJ203142.1|BJ203142
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AAGTATCTCATGGGTGACC
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACC
EST: gi|18370280|gb|BJ201882.1|BJ201882
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162268155|gb|FC443833.1|FC443833
EST:     AGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: -GTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|100432324|gb|BY960427.1|BY960427
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18350434|gb|BJ182485.1|BJ182485
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18371636|gb|BJ203238.1|BJ203238
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|208379825|gb|DC911710.1|DC911710
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162158410|gb|FC334205.1|FC334205
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18356876|gb|BJ188935.1|BJ188935
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162172410|gb|FC349079.1|FC349079
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18366369|gb|BJ198448.1|BJ198448
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162197484|gb|FC372862.1|FC372862
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|67570982|gb|BJ943806.1|BJ943806
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|100385667|gb|BY987732.1|BY987732
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18350432|gb|BJ182483.1|BJ182483
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18358768|gb|BJ190827.1|BJ190827
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18361246|gb|BJ193311.1|BJ193311
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|100417526|gb|BY975525.1|BY975525
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18374438|gb|BJ206016.1|BJ206016
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|100364006|gb|BY966279.1|BY966279
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162256553|gb|FC432863.1|FC432863
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|162206576|gb|FC382945.1|FC382945
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|22132755|gb|BQ827331.1|BQ827331
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACC
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACC
EST: gi|162222899|gb|FC399361.1|FC399361
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGG
EST: gi|18373098|gb|BJ204700.1|BJ204700
EST:     GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGA                         AGGTATCTCATGGGTGA
genomic: GGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 33 (downstream exon)
Score: 34

AATGATGCTCGTCGGTTGGGGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgctt ... tggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGGATCCCTCACTCAAGCCTCCACTTGCCGCGTGGGCTCCTTCCAGGGTGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctggattgatttacgtgtatgtttgatgagatgtgttgtctttgtggacgatagAGGTATCTCATGGGTGACCAAGGATGGCGTGCAGCACGCCAATTACTTCGGATCCCTCACTCAAGCCTCCACTTGCCGCGTGGGCTCCTTCCAGGGTGAG
                                       tctttgt  CT-rich tract
     attgattta  TA-rich tract