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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgggacagacagcgaagatgcccggaatgggttggtaaccgttttggtactttttgaaggcgggtgcaaattatgacaagttggttttcttggaaccagTGATTCACGTGACTATCGTTGTTCGGAGCGACCAGCGCCTACTTGCGCTGTCACTTTGATGCGGGACTGAAATGTGAAAGTGCACGATATCTTTTCTGAA

Basic information

species Physcomitrella patens
transcript PP1S55_144V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18329603|gb|BJ161609.1|BJ161609
EST:     GTGTTGGAGGGATTTGGGCGCGTTGGTGGTGTGACGTTATTCCGTACCCG                         TGATTCACGTGACTATCGTTGTTCGGAGCGACCAGCGCCTACTTGCGCTGT
genomic: GTGTTGGAGGGATTTGGGCGCGTTGGTGGTGTGACGTTATTCCGTACCCGgtactatgtt ... ttggaaccagTGATTCACGTGACTATCGTTGTTCGGAGCGACCAGCGCCTACTTGCGCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtactttttgaaggcgggtgcaaattatgacaagttggttttcttggaaccagTGATTCACGTGACTATCGTTGTTCGGAGCGACCAGCGCCTACTTGCGCTGTCACTTTGATGCGGGACTGAAATGTGAAAGTGCACGATATCTTTTCTGAA
                                        ttttctt  CT-rich tract
                       aaattatga  TA-rich tract