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gtaagattcctctacgcggtgtacgtgcaggaagaagcaagtgattaccagattcaagagtaatgaatacataagttctgtgttgtcgaaaaagtgattatcgttgctttgtatgaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGATTGCCCACCAGTGGGGTCTATCAAAATGGAGCACTTCTGGAATATTTCT
species | Physcomitrella patens |
transcript | PP1S55_123V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCG CCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGAEST: gi|100406388|gb|BY955602.1|BY955602
genomic: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCGgtaagattcc ... gaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGA
EST: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCG CCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGAEST: gi|100371992|gb|BY967653.1|BY967653
genomic: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCGgtaagattcc ... gaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGA
EST: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCG CCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGAEST: gi|208353550|gb|DC929677.1|DC929677
genomic: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCGgtaagattcc ... gaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGA
EST: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCG CCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGAEST: gi|100353232|gb|BY945672.1|BY945672
genomic: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCGgtaagattcc ... gaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGA
EST: TATCTCCACATGGATTCTGGATTTTGCAGCTCCAAATTTATTGCCTCTCG CCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGAEST: gi|100412798|gb|BY992441.1|BY992441
genomic: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCGgtaagattcc ... gaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGA
EST: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCG CCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGAEST: gi|100374560|gb|BY985834.1|BY985834
genomic: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCGgtaagattcc ... gaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGA
EST: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCG CCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGA
genomic: TATCTCCACATGGATTCTGGATTTTGCAGCTTCAAATTTATTGCCTCTCGgtaagattcc ... gaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGA
cataagttctgtgttgtcgaaaaagtgattatcgttgctttgtatgaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGATTGCCCACCAGTGGGGTCTATCAAAATGGAGCACTTCTGGAATATTTCT
tatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattcctctacgcggtgtacgtgcaggaagaagcaagtgattaccagattcaagagtaatgaatacataagttctgtgttgtcgaaaaagtgattatcgttgctttgtatgaaatggcagCCTTGATTACGGGAGTTGTAGTCGGCTTGGTGTACCCACGTTCTGGTCAGATTGCCCACCAGTGGGGTCTATCAAAATGGAGCACTTCTGGAATATTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA