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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttatggctttctgcacttcggtattcctgaacttcctcagtatgtgattacaggcttttgactaacttcaagtgtaatttgtttggactactttccagGGGTTTCAGCAATGCCCACAATCGACATTCACAATGGCTCTAAAGAGCTTAACGATGAGGTTAAGTCACTGGGAAAACAGTTTTCTGTTAATGAGACCTG

Basic information

species Physcomitrella patens
transcript PP1S55_113V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18346361|gb|BJ178404.1|BJ178404
EST:     CGCATTCCCCGTTCGCAGTTTCGTGCGACCTTCTAACAGAAGTATTGAAG                         GGGTTTCAGCAATGCCCACAATCGACATTCACAATGGCTCTAAAGAGCTTA
genomic: CGCATTCCCCGTTCGCAGTTTCGTGCGACCTTCTAACAGAAGTATTGAAGgcaagtgaag ... tactttccagGGGTTTCAGCAATGCCCACAATCGACATTCACAATGGCTCTAAAGAGCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgattacaggcttttgactaacttcaagtgtaatttgtttggactactttccagGGGTTTCAGCAATGCCCACAATCGACATTCACAATGGCTCTAAAGAGCTTAACGATGAGGTTAAGTCACTGGGAAAACAGTTTTCTGTTAATGAGACCTG
                gactaac  putative branch site (score: 1)
                                            ctactttcc  putative PPT
                               taatttgttt  TA-rich tract