Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaatagcacgagattaaaggttcgtttgtattcgtttagtgtgctctagatctttgcagagttttccacgattcgaccagtgattatttgtgtcaaatttgtgtgatcgttttgctgatacgtgtacttgctgcagCTACGACATTAACGGCGTTCCACTTCACAGTGACGGCCGCAGTGGGTTACATATCTTCTTCTCTAGGCTACTCCGTTTCCAAGCATTTGCCCTTCAGAGA

Basic information

species Physcomitrella patens
transcript PP1S54_317V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100427036|gb|BY958941.1|BY958941
EST:     CATGGCGAATAAGCAAGGTATGTCTGTAGGGGGCTACAACTACAGATTTG                         CTACGACATTAACGGCGGTCCACTTCACAGTGACGGCCGCCATTGGGGTAC
genomic: CATGGCGAATAAGCAAGTTATGTCTGTAGGGGGCTACAACTACAGATTTGgtaagaaata ... cttgctgcagCTACGACATTAACGGCGTTCCACTTCACAGTGACGGCCGC-AGTGGGTTAC
EST: gi|100436023|gb|BY979341.1|BY979341
EST:     CATGGCGAATAAGCAAGTTATGTCTGTAGGGGGCTACAACTACAGATTTG                         CTACGACATTAACGGCGTTCCACTTCACAGTGACGGCCGCAGTGGGTTACA
genomic: CATGGCGAATAAGCAAGTTATGTCTGTAGGGGGCTACAACTACAGATTTGgtaagaaata ... cttgctgcagCTACGACATTAACGGCGTTCCACTTCACAGTGACGGCCGCAGTGGGTTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattatttgtgtcaaatttgtgtgatcgttttgctgatacgtgtacttgctgcagCTACGACATTAACGGCGTTCCACTTCACAGTGACGGCCGCAGTGGGTTACATATCTTCTTCTCTAGGCTACTCCGTTTCCAAGCATTTGCCCTTCAGAGA
                               tgctgat  putative branch site (score: 3)
           tcaaattt  TA-rich tract