1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acacctacgagaagccattagaagccaaggtgatttttttttccacgtgcgggtcctcagcgagctcgtctgactcccaattcaatcactttctttccagCATATCAACGTTTTCAGGCGCAACAACCGCTAACGCAGGTTATGTAGCGGGGGATGGTAGTCAGGAGATGGAGCGGGTGGAGGCACATTTTAGAGTTCCA
species | Physcomitrella patens |
transcript | PP1S52_69V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGGCAGTGAGCAAGGAAAGCCTGTGAGAACTGCCTTCTTGTCTACCAG CATATCAACGTTTTCAGGCGCAACAACCGCTAACGCAGGTTATGTAGCGGGEST: gi|67575409|gb|BJ948233.1|BJ948233
genomic: CAAGGCAGTGAGCAAGGAAAGCCTGTGAGAACTGCTTTCTTGTCTACCAGgttcagcact ... ttctttccagCATATCAACGTTTTCAGGCGCAACAACCGCTAACGCAGGTTATGTAGCGGG
EST: CAAGGCAGTGAGCAAGGAAAGCCTGTGAGAACTGCTTTCTTGTCTACCAG CATATCAACGTTTTCAGGCGCAACAACCGCTAACGCAGGTTATGTAGCGGGEST: gi|100424181|gb|BY958355.1|BY958355
genomic: CAAGGCAGTGAGCAAGGAAAGCCTGTGAGAACTGCTTTCTTGTCTACCAGgttcagcact ... ttctttccagCATATCAACGTTTTCAGGCGCAACAACCGCTAACGCAGGTTATGTAGCGGG
EST: CAAGGCAGTGAGCAAGGAAAGCCTGTGAGAACTGCTTTCTTGTCTACCAG CATATCAACGTTTTCAGGCGCAACAACCGCTAACGCAGGTTATGTAGCGNG
genomic: CAAGGCAGTGAGCAAGGAAAGCCTGTGAGAACTGCTTTCTTGTCTACCAGgttcagcact ... ttctttccagCATATCAACGTTTTCAGGCGCAACAACCGCTAACGCAGGTTATGTAGCGGG
cgtgcgggtcctcagcgagctcgtctgactcccaattcaatcactttctttccagCATATCAACGTTTTCAGGCGCAACAACCGCTAACGCAGGTTATGTAGCGGGGGATGGTAGTCAGGAGATGGAGCGGGTGGAGGCACATTTTAGAGTTCCA
gtctgac putative branch site (score: 3)
tcactttctttcc putative PPT
aattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacctacgagaagccattagaagccaaggtgatttttttttccacgtgcgggtcctcagcgagctcgtctgactcccaattcaatcactttctttccagCATATCAACGTTTTCAGGCGCAACAACCGCTAACGCAGGTTATGTAGCGGGGGATGGTAGTCAGGAGATGGAGCGGGTGGAGGCACATTTTAGAGTTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - -cacgtgc