1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctctccatttttgtcccagattttttcccatggggacaggggagttatgtggtgagaatggatttatcatcgagtaggctaatgttcataataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTTCGCTTGTGTGACCGCCATCTCGGCATTGGTGGCGATGGTGTCATCTTTG
species | Physcomitrella patens |
transcript | PP1S51_241V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATG GTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTTEST: gi|67577682|gb|BJ949849.1|BJ949849
genomic: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATGgtgagcattt ... ataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTT
EST: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATG GTCAACAACCTCGATTTTTCGGAACCGATCATEST: gi|162232388|gb|FC408822.1|FC408822
genomic: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATGgtgagcattt ... ataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCAT
EST: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATG GTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTTEST: gi|18375241|gb|BJ206819.1|BJ206819
genomic: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATGgtgagcattt ... ataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTT
EST: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATG GTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAEST: gi|162233273|gb|FC409615.1|FC409615
genomic: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATGgtgagcattt ... ataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCA
EST: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATG GTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTTEST: gi|18347946|gb|BJ179993.1|BJ179993
genomic: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATGgtgagcattt ... ataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTT
EST: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATG GTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGEST: gi|162252752|gb|FC428789.1|FC428789
genomic: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATGgtgagcattt ... ataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAG
EST: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATG GTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTT
genomic: GAACGTTGGAGTTTGTGAAGTACCAAGGTATCGGCAATGACTTCATCATGgtgagcattt ... ataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTT
tatgtggtgagaatggatttatcatcgagtaggctaatgttcataataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTTCGCTTGTGTGACCGCCATCTCGGCATTGGTGGCGATGGTGTCATCTTTG
ggctaat putative branch site (score: 16)
taatgttcataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctccatttttgtcccagattttttcccatggggacaggggagttatgtggtgagaatggatttatcatcgagtaggctaatgttcataataattgcagGTCAACAACCTCGATTTTTCGGAACCGATCATAACTGCGGCAGAGGCTGTTCGCTTGTGTGACCGCCATCTCGGCATTGGTGGCGATGGTGTCATCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG