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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttcgtagtgcatggatatttctgggaagcgagtgccatcgctaatttagtttggtgtcgtcttggtactgagattctgaaattcaatgtctatgcagGGCCCAGAGCATGAAGCATTTGTTGCAGCTGCGAAATCGGAAATGAACACTGAGTTCGTGCAAACCACGGTTGCGGAAGTTGCGCAAGTGTTCATCAGGC

Basic information

species Physcomitrella patens
transcript PP1S4_328V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162279239|gb|FC455786.1|FC455786
EST:     TTCTGAAAAAGAATCTGACTACAGTTCTTGGTTACTTTGACAAGCTAGAG                         GGCCCAGAGCATGAAGCATTTGTTGCAGCTGCGAAATCGGAAATGAACACT
genomic: TTCTGAAAAAGAATCTGACTACAGTTCTTGGTTACTTTGACAAGCTAGAGgtacatctta ... gtctatgcagGGCCCAGAGCATGAAGCATTTGTTGCAGCTGCGAAATCGGAAATGAACACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttagtttggtgtcgtcttggtactgagattctgaaattcaatgtctatgcagGGCCCAGAGCATGAAGCATTTGTTGCAGCTGCGAAATCGGAAATGAACACTGAGTTCGTGCAAACCACGGTTGCGGAAGTTGCGCAAGTGTTCATCAGGC
 cgctaat  putative branch site (score: 3)
                                    aaattcaat  TA-rich tract