Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100398015|gb|BY954045.1|BY954045EST: CAACTGGGAAGGAGACNACAAGAGAGGGCTGGTGTGGAATGGCTCTGCAG CCTCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCTC
genomic: CAACTGGGAAGGAGACAACAAGAGAGGGCTGGTGTGGAATGGCTCTGCAGgtagatgtgc ... cgtttatcagCCTCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCTC
EST:
gi|100394952|gb|BY990007.1|BY990007EST: CAACTGGGAAGGAGACAACAAGAGAGGGCTGGTGTGGAATGGCTCTGCAG CCTCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCTC
genomic: CAACTGGGAAGGAGACAACAAGAGAGGGCTGGTGTGGAATGGCTCTGCAGgtagatgtgc ... cgtttatcagCCTCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCTC
EST:
gi|100374910|gb|BY949119.1|BY949119EST: CAACTGGGAAGGAGACAACAAGAAAGGGCTGGTGTGGAATGGCTCTGCAG CCCTCA-TGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCT
genomic: CAACTGGGAAGGAGACAACAAGAGAGGGCTGGTGTGGAATGGCTCTGCAGgtagatgtgc ... cgtttatcagCC-TCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCT
EST:
gi|100388270|gb|BY951872.1|BY951872EST: CAACTGGGAAGGAGACAACAAGAGAGGGCTGGTGTGGAATGGCTCTGCAG CCTCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCTC
genomic: CAACTGGGAAGGAGACAACAAGAGAGGGCTGGTGTGGAATGGCTCTGCAGgtagatgtgc ... cgtttatcagCCTCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCTC
EST:
gi|100379825|gb|BY949963.1|BY949963EST: A-CTGG-AAGGGAGACAACA-GAGAGGGCTGGTGTGGAATGGCTCTGCAG CCCTCA-TGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCT
genomic: AACTGGGAAGG-AGACAACAAGAGAGGGCTGGTGTGGAATGGCTCTGCAGgtagatgtgc ... cgtttatcagCC-TCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccaggtatgcctaacgcacgatgatgatgccatctgttgtgttgcgtttatcagCCTCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCTCGACACATGCGGAAGCCGGACTTCAACGTGCTCGCAGCTCTGCAACTCCA
gcctaac putative branch site (score: 2)
tttatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagatgtgctcgctgctagtctttgacatggtctcagcgcttgagtttttgatttgtggaattttcggacactttagagcatgaaagcttccacttacaatttctctgagctcttcattctcgttctccttttcaaattccaggtatgcctaacgcacgatgatgatgccatctgttgtgttgcgtttatcagCCTCAATGCGCATCGATCTAGAGTTGCTGTCTTTGCTGCTCACACTCCCTCGACACATGCGGAAGCCGGACTTCAACGTGCTCGCAGCTCTGCAACTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC