1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gcagaagcgtaaggttttcagaatttttgggactactttgtcgtcaattaatgtaagccttgcagtagttttcggttttgacccaatgacttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAAGAGAGATTCGTCAGTACTTCTACAAAGACGCGTGCCAGGCAGCTAAGA
species | Physcomitrella patens |
transcript | PP1S49_285V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|100392123|gb|BY953205.1|BY953205
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|208377279|gb|DC932429.1|DC932429
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|100394360|gb|BY972030.1|BY972030
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|100416278|gb|BY975313.1|BY975313
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|208384727|gb|DC915274.1|DC915274
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGGAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|162215240|gb|FC390813.1|FC390813
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|208346693|gb|DC913339.1|DC913339
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|100408084|gb|BY955901.1|BY955901
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|67569115|gb|BJ941939.1|BJ941939
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAEST: gi|100382686|gb|BY986915.1|BY986915
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
EST: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAG GTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
genomic: ATTCGGGCTGAAGGTGCCCCTAATTTGGAAACTGGTGACAAGgtaaatcact ... ttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCA
aattaatgtaagccttgcagtagttttcggttttgacccaatgacttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAAGAGAGATTCGTCAGTACTTCTACAAAGACGCGTGCCAGGCAGCTAAGA
ttttgac putative branch site (score: 7)
cttcctt putative PPT
tagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagaagcgtaaggttttcagaatttttgggactactttgtcgtcaattaatgtaagccttgcagtagttttcggttttgacccaatgacttccttgaagGTCTCTGGTTGGAGAGGAGTGCCGACAAAACTAAACACATGCCCACATTCAAGAGAGATTCGTCAGTACTTCTACAAAGACGCGTGCCAGGCAGCTAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT