1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttgaaattcttaatttttgttctatttggatttgatttgagagggatattgtaagcatgtgtaattctttatgagcctgatacctggacctgggtgtagCTTAAGTTTTTTGGAGGACCAAGGGATTGATTTAATCCGGCCCTGTCAAGAGCTTGCGGAGCTCCAGAGTCAAGCTAACTCCTCGATGTCTGAGGCGGAA
species | Physcomitrella patens |
transcript | PP1S49_275V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCTTCGACGAACCATCTCAACCATT CTTAAGTTTTTTGGAGGACCAAGGGATTGATTTAATCCGGCCCTGTCAAGAEST: gi|67574949|gb|BJ947773.1|BJ947773
genomic: TCCTTCGACGAACCATCTCAACCATTgtaacttcat ... ctgggtgtagCTTAAGTTTTTTGGAGGACCAAGGGATTGATTTAATCCGGCCCTGTCAAGA
EST: AATCTCAAGACAGTCATCTACCTGTCCTTCGACGAACCATCTCAACCATT CTTAAGTTTTTTGGAGGACCAAGGGATTGATTTAATCCGGCCCTGTCAAGAEST: gi|67698376|gb|BJ958609.1|BJ958609
genomic: AATCTCAAGACAGTCATCTACCTGTCCTTCGACGAACCATCTCAACCATTgtaacttcat ... ctgggtgtagCTTAAGTTTTTTGGAGGACCAAGGGATTGATTTAATCCGGCCCTGTCAAGA
EST: AATCTCAAGACAGTCATCTACCTGTCCTTCGACGAACCATCTCAACCATT CTTAAGTTTTTTGGAGGACCAAGGGATTGATTTAATCCGGCCCTGTCAAGA
genomic: AATCTCAAGACAGTCATCTACCTGTCCTTCGACGAACCATCTCAACCATTgtaacttcat ... ctgggtgtagCTTAAGTTTTTTGGAGGACCAAGGGATTGATTTAATCCGGCCCTGTCAAGA
gatattgtaagcatgtgtaattctttatgagcctgatacctggacctgggtgtagCTTAAGTTTTTTGGAGGACCAAGGGATTGATTTAATCCGGCCCTGTCAAGAGCTTGCGGAGCTCCAGAGTCAAGCTAACTCCTCGATGTCTGAGGCGGAA
gcctgat putative branch site (score: 13)
taattctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgaaattcttaatttttgttctatttggatttgatttgagagggatattgtaagcatgtgtaattctttatgagcctgatacctggacctgggtgtagCTTAAGTTTTTTGGAGGACCAAGGGATTGATTTAATCCGGCCCTGTCAAGAGCTTGCGGAGCTCCAGAGTCAAGCTAACTCCTCGATGTCTGAGGCGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC