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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcacagcctgggcaacctctgtaatttgtaacctggaatattttctacaacgaattcgttttctaatctaatgtcttcacacctgtgctgatgttattccagCTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATGGTGAAGTTGCAAACAGATCGTCGTTCTCCCGACTTCCCTGGCTTGGTTC

Basic information

species Physcomitrella patens
transcript PP1S49_273V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162214691|gb|FC391762.1|FC391762
EST:     CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAG                         CTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
genomic: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAGgtattcacag ... gttattccagCTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacgaattcgttttctaatctaatgtcttcacacctgtgctgatgttattccagCTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATGGTGAAGTTGCAAACAGATCGTCGTTCTCCCGACTTCCCTGGCTTGGTTC
                                              ttattcc  CT-rich tract
           ttttctaatctaat  TA-rich tract