1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttctggatcaaatttggtatgccctacagctcgcatcgactgcatttaacattcttggcatgggaatttaacttatgcgtttctggtgcatatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAACTCATTTGTGATTCTGTTCTACCTTCCAAGCCTGGAGCTGACGTCCCAA
species | Physcomitrella patens |
transcript | PP1S49_263V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|208383152|gb|DC907182.1|DC907182
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAANTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|18371387|gb|BJ202989.1|BJ202989
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|162203955|gb|FC380247.1|FC380247
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|100443698|gb|BY963795.1|BY963795
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|18364516|gb|BJ196589.1|BJ196589
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|67709326|gb|BJ965142.1|BJ965142
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|18348290|gb|BJ180337.1|BJ180337
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|67712572|gb|BJ966021.1|BJ966021
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|18371459|gb|BJ203061.1|BJ203061
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|162193014|gb|FC371958.1|FC371958
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|162170538|gb|FC347671.1|FC347671
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|162182905|gb|FC359795.1|FC359795
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|162151107|gb|FC327639.1|FC327639
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|18365107|gb|BJ197181.1|BJ197181
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|67716577|gb|BJ966837.1|BJ966837
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|18368549|gb|BJ200634.1|BJ200634
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|162237663|gb|FC413694.1|FC413694
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: CCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAAEST: gi|162268191|gb|FC443869.1|FC443869
genomic: CCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
EST: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAG GCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
genomic: TCCCAGCTCAACCCCAGAACAAGGGTGTCAATTGCCACTGCTCCTCTGAGgtttgtccgg ... atatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAA
tttaacattcttggcatgggaatttaacttatgcgtttctggtgcatatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAACTCATTTGTGATTCTGTTCTACCTTCCAAGCCTGGAGCTGACGTCCCAA
atttaac putative branch site (score: 13)
aatttaacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctggatcaaatttggtatgccctacagctcgcatcgactgcatttaacattcttggcatgggaatttaacttatgcgtttctggtgcatatttgcagGCTATGAAGAATGCAACCAAAGTGTCTGTGGTTCTACCCACCGGAGAGGAACTCATTTGTGATTCTGTTCTACCTTCCAAGCCTGGAGCTGACGTCCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA