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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcacaaggcatttcgtggattatttagtcacgttagtgatcatgaaatggatgcagcatactcagtgttaatttgtctgcgccttgaactacttgtgcagCTTTATTGTAGAATTTATGAGCAGGACGCCTGATCCTGACAAAGACAGCGAGAGTGTTCAAAGTTTTTTGACTACAACTGAGGGTGCTTTCGGAGCCCAT

Basic information

species Physcomitrella patens
transcript PP1S49_250V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18368261|gb|BJ200346.1|BJ200346
EST:     GATCGGATGCGCCATCCTCAAGCTGTAGATCTTGTTAAGTCCATCAAGAG                         CTTTATTGTAGAATTTATGAGCAGGACGCCTGATCCTGACAAAGACAGCGA
genomic: GATCGGATGCGCCATCCTCAAGCTGTAGATCTTGTTAAGTCCATCAAGAGgtagtactcc ... acttgtgcagCTTTATTGTAGAATTTATGAGCAGGACGCCTGATCCTGACAAAGACAGCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggatgcagcatactcagtgttaatttgtctgcgccttgaactacttgtgcagCTTTATTGTAGAATTTATGAGCAGGACGCCTGATCCTGACAAAGACAGCGAGAGTGTTCAAAGTTTTTTGACTACAACTGAGGGTGCTTTCGGAGCCCAT
                    tgttaat  putative branch site (score: 3)
                    tgttaattt  TA-rich tract