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gtaagtctttctatactaaaacttggtgtttttgagactgagtgggaacaatacattatacctgttgtgttcatgtttcgctattatctagtcctggttttgtggctttaatggatgtagtgttggcagGTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGGATCACTATAGTGCCCGAAGCAACCAGACCCGTGAGCAGAGGGAAGCGAG
species | Physcomitrella patens |
transcript | PP1S49_100V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATGAAGAGGGCTCATGATATCGACGAATCTGCCACGAAACGTCTCCGTC GTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGGEST: gi|18351314|gb|BJ183366.1|BJ183366
genomic: AATGAAGAGGGCTCATGATATCGACGAATCTGCCACGAAACGTCTCCGTCgtaagtcttt ... gtgttggcagGTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGG
EST: AATGAAGAGGGCTCATGATATCGACGAATCTGCCACGAAACGTCTCCGTC GTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGGEST: gi|18351940|gb|BJ183992.1|BJ183992
genomic: AATGAAGAGGGCTCATGATATCGACGAATCTGCCACGAAACGTCTCCGTCgtaagtcttt ... gtgttggcagGTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGG
EST: AATGAAGAGGGCTCATGATATCGACGAATCTGCCACGAAACGTCTCCGTC GTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGGEST: gi|100414488|gb|BY992798.1|BY992798
genomic: AATGAAGAGGGCTCATGATATCGACGAATCTGCCACGAAACGTCTCCGTCgtaagtcttt ... gtgttggcagGTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGG
EST: AATGAAGAGGGCTCATGATATCGACGAATCTGCCACGAAACGTCTCCGTC GTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGG
genomic: AATGAAGAGGGCTCATGATATCGACGAATCTGCCACGAAACGTCTCCGTCgtaagtcttt ... gtgttggcagGTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGG
gtttcgctattatctagtcctggttttgtggctttaatggatgtagtgttggcagGTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGGATCACTATAGTGCCCGAAGCAACCAGACCCGTGAGCAGAGGGAAGCGAG
ctttaat putative branch site (score: 4)
tattatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctttctatactaaaacttggtgtttttgagactgagtgggaacaatacattatacctgttgtgttcatgtttcgctattatctagtcctggttttgtggctttaatggatgtagtgttggcagGTGATGGTGTGAATGACACACAGGGCAAAGAGATTGTGCGGCAAGTTGCGGATCACTATAGTGCCCGAAGCAACCAGACCCGTGAGCAGAGGGAAGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG