1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttcggagtagtgaggctatattttattatctctaaaattatttcttctgtaaccgaggcgatatttctcgaacatgttgcaactcttgcgtaatgcagAAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTGGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG
species | Physcomitrella patens |
transcript | PP1S497_3V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGCAATGCTCGAGGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAG AAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTGEST: gi|100404070|gb|BY955240.1|BY955240
genomic: GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAGgtgtgttgct ... cgtaatgcagAAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG
EST: GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAG AAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTGEST: gi|208378412|gb|DC923055.1|DC923055
genomic: GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAGgtgtgttgct ... cgtaatgcagAAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG
EST: GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAG AAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG
genomic: GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAGgtgtgttgct ... cgtaatgcagAAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG
cttctgtaaccgaggcgatatttctcgaacatgttgcaactcttgcgtaatgcagAAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTGGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG
ctgtaac putative branch site (score: 3)
ctcttgc putative PPT
atatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcggagtagtgaggctatattttattatctctaaaattatttcttctgtaaccgaggcgatatttctcgaacatgttgcaactcttgcgtaatgcagAAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTGGCTAACGACCAGATTAAAGAATTTAGGCAGAAGCTTCGGGAAGCCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgca