1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgaaaattagcatatctacgctccattcttaattcccacaattcagtcatcgatagcatttcgaatctcctcattttctaacaagaactggggcgttggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCACCGATGTGAAAGAAGGCATGAAGATCTTCGACGAGGAGATTTTCGGACC
species | Physcomitrella patens |
transcript | PP1S496_1V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCCEST: gi|162225460|gb|FC400913.1|FC400913
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTT-C
EST: GATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCG-TTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37836698|gb|BJ594706.1|BJ594706
genomic: GATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162167068|gb|FC342530.1|FC342530
genomic: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37850337|gb|BJ608345.1|BJ608345
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGG--ATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208374997|gb|DC944792.1|DC944792
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162188157|gb|FC363923.1|FC363923
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208393943|gb|DC928723.1|DC928723
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208363675|gb|DC954646.1|DC954646
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208375074|gb|DC956442.1|DC956442
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37822382|gb|BJ580448.1|BJ580448
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: CGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|67720332|gb|BJ970591.1|BJ970591
genomic: CGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GNTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCATTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37846353|gb|BJ604361.1|BJ604361
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GGATATGTNGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGCCAACCATCTTCAEST: gi|37833046|gb|BJ591058.1|BJ591058
genomic: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: CGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCCEST: gi|208365050|gb|DC947314.1|DC947314
genomic: CGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTT-C
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|18333503|gb|BJ165518.1|BJ165518
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GGCATGNAACAGGGTGCCAACCTTATCACAG GTGNAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|18340081|gb|BJ172109.1|BJ172109
genomic: GGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162208999|gb|FC385551.1|FC385551
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATTTTCAEST: gi|22132544|gb|BQ827221.1|BQ827221
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGGCGGTTTGGGEST: gi|162258259|gb|FC434658.1|FC434658
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCG-TTTGGG
EST: GCTTGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37835215|gb|BJ593227.1|BJ593227
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: TCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACNTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCCEST: gi|208350254|gb|DC925730.1|DC925730
genomic: TCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTT-C
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37850099|gb|BJ608107.1|BJ608107
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GNTNGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGCCAACCATCTTCAEST: gi|37835398|gb|BJ593410.1|BJ593410
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: TCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208379348|gb|DC918992.1|DC918992
genomic: TCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|18340986|gb|BJ173018.1|BJ173018
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208389120|gb|DC945696.1|DC945696
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTANTACATCAAGCCAACCATCTTCAEST: gi|208373045|gb|DC948810.1|DC948810
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|18339993|gb|BJ172021.1|BJ172021
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGNAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162265227|gb|FC441314.1|FC441314
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208371953|gb|DC951930.1|DC951930
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162252633|gb|FC428664.1|FC428664
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162176558|gb|FC353027.1|FC353027
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: ACCTTATCACAG GTGGAGGTCG-TTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37826597|gb|BJ584609.1|BJ584609
genomic: ACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: ATGTCGAGAGCGGCATGGAACAGGGTGCCAACNTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37832111|gb|BJ590123.1|BJ590123
genomic: ATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|67724035|gb|BJ974294.1|BJ974294
genomic: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162265226|gb|FC441313.1|FC441313
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: ATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162262444|gb|FC439695.1|FC439695
genomic: ATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|67724124|gb|BJ974383.1|BJ974383
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|7067452|gb|AW497307.1|AW497307
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162184777|gb|FC361079.1|FC361079
genomic: GCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162206121|gb|FC383114.1|FC383114
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTTGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162271487|gb|FC446436.1|FC446436
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|67720204|gb|BJ970463.1|BJ970463
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GNTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162188156|gb|FC363922.1|FC363922
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|19781668|gb|BQ039753.1|BQ039753
genomic: GATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162262443|gb|FC439694.1|FC439694
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162255667|gb|FC431665.1|FC431665
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208367149|gb|DC947841.1|DC947841
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GNTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGANGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATNTTCAEST: gi|162191366|gb|FC367122.1|FC367122
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|18334651|gb|BJ166668.1|BJ166668
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: ATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37836673|gb|BJ594681.1|BJ594681
genomic: ATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208360110|gb|DC950153.1|DC950153
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: CTCGGATATGTCGAGAGCGGCATGGAACCAGGGTGCCAACNTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|37827826|gb|BJ585838.1|BJ585838
genomic: CTCGGATATGTCGAGAGCGGCATGGAA-CAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: TCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGACAACCATNTTNCEST: gi|162197029|gb|FC373369.1|FC373369
genomic: TCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTT-C
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTANTACATCAAGCCAACCATCTTCAEST: gi|162279856|gb|FC455140.1|FC455140
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208347226|gb|DC917157.1|DC917157
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGANCAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|18340698|gb|BJ172728.1|BJ172728
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: CGGCATGNAACAGGGTGCCAACCTTATCACAG GTGNAGGTCGTTTGGGNAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208369486|gb|DC948356.1|DC948356
genomic: CGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GNTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|18335342|gb|BJ167360.1|BJ167360
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162265112|gb|FC440991.1|FC440991
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGAAACAGGGCGCCAACCTTATCACAG GTGGAGGTCGTTTGTAGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|162273408|gb|FC449857.1|FC449857
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208375117|gb|DC944856.1|DC944856
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTANTACATCAAGCCAACCATCTTCAEST: gi|162271486|gb|FC446435.1|FC446435
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|208382024|gb|DC923492.1|DC923492
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGCCAACCATCTTCAEST: gi|37840676|gb|BJ598684.1|BJ598684
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: CGAGAGCGGCATGGAACAGGGTGCCANCCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTANTACATCAAGCCAACCATCTTCAEST: gi|37831976|gb|BJ589988.1|BJ589988
genomic: CGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGNTANTACATCAAGCCAACCATCTTCAEST: gi|37844050|gb|BJ602058.1|BJ602058
genomic: GGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCAEST: gi|18334318|gb|BJ166335.1|BJ166335
genomic: GTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
EST: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAG GTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
genomic: GCTCGGATATGTCGAGAGCGGCATGGAACAGGGTGCCAACCTTATCACAGgtgaaaatta ... tggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCA
gatagcatttcgaatctcctcattttctaacaagaactggggcgttggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCACCGATGTGAAAGAAGGCATGAAGATCTTCGACGAGGAGATTTTCGGACC
ttctaac putative branch site (score: 1)
attttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaattagcatatctacgctccattcttaattcccacaattcagtcatcgatagcatttcgaatctcctcattttctaacaagaactggggcgttggtctgcagGTGGAGGTCGTTTGGGGAGCAAGGGCTACTACATCAAGCCAACCATCTTCACCGATGTGAAAGAAGGCATGAAGATCTTCGACGAGGAGATTTTCGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT