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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtctcttttccctttctctcgctgtctcgctcacccacagtatctcttcttttgctgtacattgtgtgctcagaagcccacagcgcgcgcggctttgaacgctgcagaatttctgtgagcactgactcgattgccttctaggttttcacaaccctcaaccatatattttcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAACGATGGACTCTGGAAAGCCCTATGAGCAGGCCCGCTACGCCGAGCTCCCC

Basic information

species Physcomitrella patens
transcript PP1S496_1V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18347400|gb|BJ179446.1|BJ179446
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTT
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTT
EST: gi|100404009|gb|BY955209.1|BY955209
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162279857|gb|FC455141.1|FC455141
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162276334|gb|FC452116.1|FC452116
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18352282|gb|BJ184336.1|BJ184336
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCANATTTGCTCGACCAGCATGCGGACGA
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGA
EST: gi|18345049|gb|BJ177090.1|BJ177090
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208359177|gb|DC934680.1|DC934680
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162225461|gb|FC400914.1|FC400914
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208388078|gb|DC933170.1|DC933170
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100360365|gb|BY984166.1|BY984166
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18330154|gb|BJ162160.1|BJ162160
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGG
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGG
EST: gi|100447785|gb|CJ972084.1|CJ972084
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100429628|gb|BY959658.1|BY959658
EST:     GGACCCTGGCCGAAAATGCCCCCTTTTCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100415035|gb|BY975134.1|BY975134
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208390443|gb|DC933700.1|DC933700
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162209000|gb|FC385552.1|FC385552
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18353741|gb|BJ185796.1|BJ185796
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGA
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGA
EST: gi|100448314|gb|CJ972613.1|CJ972613
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100389688|gb|BY952494.1|BY952494
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18328687|gb|BJ160692.1|BJ160692
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAA
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAA
EST: gi|67710120|gb|BJ965860.1|BJ965860
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18326665|gb|BJ158664.1|BJ158664
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18324969|gb|BJ156964.1|BJ156964
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100444752|gb|BY982581.1|BY982581
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATNTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162191565|gb|FC368491.1|FC368491
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100358007|gb|BY965425.1|BY965425
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18348529|gb|BJ180578.1|BJ180578
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18357330|gb|BJ189389.1|BJ189389
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100388557|gb|BY952159.1|BY952159
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100391059|gb|BY953069.1|BY953069
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100364718|gb|BY947873.1|BY947873
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18325218|gb|BJ157214.1|BJ157214
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18355159|gb|BJ187218.1|BJ187218
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18343181|gb|BJ175219.1|BJ175219
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18355660|gb|BJ187719.1|BJ187719
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGGAAA
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGG-AAA
EST: gi|100444756|gb|BY982585.1|BY982585
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18356104|gb|BJ188163.1|BJ188163
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100430440|gb|BY959870.1|BY959870
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGGAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208380701|gb|DC903249.1|DC903249
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208359780|gb|DC938913.1|DC938913
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100399633|gb|BY972816.1|BY972816
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100444983|gb|BY982811.1|BY982811
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100372644|gb|BY948634.1|BY948634
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18325542|gb|BJ157539.1|BJ157539
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162258260|gb|FC434659.1|FC434659
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|67704752|gb|BJ964985.1|BJ964985
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208387013|gb|DC941647.1|DC941647
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100411642|gb|BY992266.1|BY992266
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100444629|gb|BY982458.1|BY982458
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208387951|gb|DC932875.1|DC932875
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100444979|gb|BY982807.1|BY982807
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162162279|gb|FC338061.1|FC338061
EST:     CGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: CGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|67709957|gb|BJ965773.1|BJ965773
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162255668|gb|FC431666.1|FC431666
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18363543|gb|BJ195615.1|BJ195615
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGG
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGG
EST: gi|100387478|gb|BY988349.1|BY988349
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100385890|gb|BY951084.1|BY951084
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100411447|gb|BY974640.1|BY974640
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGANAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208360476|gb|DC930259.1|DC930259
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|67702415|gb|BJ962648.1|BJ962648
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCANATTTGCTCGACCAGCATGCG
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCG
EST: gi|100401254|gb|BY990910.1|BY990910
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18365897|gb|BJ197975.1|BJ197975
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100438257|gb|BY979866.1|BY979866
EST:     ACCCTGGCCGAAAATGCCCCCCTTTCCAGCGCCAGCGAATACTCCTNCA-                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAA
genomic: ACCCTGGCCGAAAATGCCCCC-TTTCCAGCGCCAGCGAATACTCCT-CAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAA
EST: gi|162157398|gb|FC333487.1|FC333487
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100384858|gb|BY969593.1|BY969593
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGNAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208344656|gb|DC905105.1|DC905105
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18360408|gb|BJ192470.1|BJ192470
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGA
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGA
EST: gi|18326840|gb|BJ158840.1|BJ158840
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162167069|gb|FC342531.1|FC342531
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100359892|gb|BY947174.1|BY947174
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18352306|gb|BJ184360.1|BJ184360
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208345702|gb|DC909633.1|DC909633
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|208354812|gb|DC934220.1|DC934220
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18344052|gb|BJ176091.1|BJ176091
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCANCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100385677|gb|BY987742.1|BY987742
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100385295|gb|BY950887.1|BY950887
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162191367|gb|FC367123.1|FC367123
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100380952|gb|BY986818.1|BY986818
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|18344673|gb|BJ176714.1|BJ176714
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100442620|gb|BY981445.1|BY981445
EST:     GACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCCTCA-                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGNAA
genomic: GACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCC-TCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAA
EST: gi|100452136|gb|CJ975118.1|CJ975118
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|100387073|gb|BY951472.1|BY951472
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162273979|gb|FC450118.1|FC450118
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
EST: gi|162197030|gb|FC373370.1|FC373370
EST:     GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAA                         GTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC
genomic: GGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 30 (downstream exon)
Score: 18

TCGAAGATGTCAACCGCGCTGTGAGAGCTGCCCGCAAGGCCTTCGATCATGGACCCTGGCCGAAAATGCCCCCTTTCCAGCGCCAGCGAATACTCCTCAAgtatgtgtct ... tcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAACGATGGACTCTGGAAAGCCCTATGAGCAGGCCCGCTACGCCGAGCTCCCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactcgattgccttctaggttttcacaaccctcaaccatatattttcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAACGATGGACTCTGGAAAGCCCTATGAGCAGGCCCGCTACGCCGAGCTCCCC
 cactgac  putative branch site (score: 18)
                                        tattttc  putative PPT
                                     atatattttcataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtgtctcttttccctttctctcgctgtctcgctcacccacagtatctcttcttttgctgtacattgtgtgctcagaagcccacagcgcgcgcggctttgaacgctgcagaatttctgtgagcactgactcgattgccttctaggttttcacaaccctcaaccatatattttcataaccagGTACGCAGATTTGCTCGACCAGCATGCGGACGAGCTCGCAGCGCTGGAAACGATGGACTCTGGAAAGCCCTATGAGCAGGCCCGCTACGCCGAGCTCCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG