1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcactacgctctttcttgtcttaatcgaagggatattcctgtaaggttttttagcctttatcgtttcataatgctccctagataacgttttcttgacagGCTCCTCCGAGGAACCATGAAGCAATGGATGCTGAGTCGGTTGAACCGAAATTAAGCTCCCCAGGAGCACATCTTCAAATCCAACTGGAG
species | Physcomitrella patens |
transcript | PP1S490_11V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAAAGCCCTTTGAGAAGCGGTCCTGCTGCTCTGCATTGCGACTGCTCT GCTCCTCCGAGGAACCATGAAGCAATGGATGCTGAGTCGGTTGAACCGAAAEST: gi|67695391|gb|BJ955624.1|BJ955624
genomic: CCAAAAGCCCTTTGAGAAGCGGTCCTGCTGCTCTGCATTGCGACTGCTCTgtaagtgcct ... ttcttgacagGCTCCTCCGAGGAACCATGAAGCAATGGATGCTGAGTCGGTTGAACCGAAA
EST: CCAAAAGCCCTTTGAGAAGCGGTCCTGCTGCTCTGCATTGCGACTGCTCT GCTCCTCCGAGGAACCATGAAGCAATGGATGCTGAGTCGGTTGAACCGAAAEST: gi|162278301|gb|FC454179.1|FC454179
genomic: CCAAAAGCCCTTTGAGAAGCGGTCCTGCTGCTCTGCATTGCGACTGCTCTgtaagtgcct ... ttcttgacagGCTCCTCCGAGGAACCATGAAGCAATGGATGCTGAGTCGGTTGAACCGAAA
EST: CCAAAAGCCCTTTGAGAAGCGGTCCTGCTGCTCTGCATTGCGACTGCTCT GCTCCTCCGAGGAACCATGAAGCAATGGATGCTGAGTCGGTTGAACCGAAA
genomic: CCAAAAGCCCTTTGAGAAGCGGTCCTGCTGCTCTGCATTGCGACTGCTCTgtaagtgcct ... ttcttgacagGCTCCTCCGAGGAACCATGAAGCAATGGATGCTGAGTCGGTTGAACCGAAA
ggttttttagcctttatcgtttcataatgctccctagataacgttttcttgacagGCTCCTCCGAGGAACCATGAAGCAATGGATGCTGAGTCGGTTGAACCGAAATTAAGCTCCCCAGGAGCACATCTTCAAATCCAACTGGAG
agataac putative branch site (score: 28)
cgttttctt CT-rich tract
tttcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcactacgctctttcttgtcttaatcgaagggatattcctgtaaggttttttagcctttatcgtttcataatgctccctagataacgttttcttgacagGCTCCTCCGAGGAACCATGAAGCAATGGATGCTGAGTCGGTTGAACCGAAATTAAGCTCCCCAGGAGCACATCTTCAAATCCAACTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA