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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cactccaatgtgaattcaaaatcgcagacggagagcgcaagttatgtggtttgtgatccaaaatgcaacgttttattgacatcacctcttttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCAGGTCGCACACGTGCCGGAGGGCGTCAACATCGTCCTCACATACGACCAA

Basic information

species Physcomitrella patens
transcript PP1S48_255V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100393024|gb|BY989722.1|BY989722
EST:     CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG                         GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: gi|162184335|gb|FC360537.1|FC360537
EST:     CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG                         GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: gi|162178712|gb|FC353968.1|FC353968
EST:     CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG                         GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: gi|100352954|gb|BY945533.1|BY945533
EST:     CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG                         GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAAACTGCA
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: gi|162186349|gb|FC361657.1|FC361657
EST:     CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG                         GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: gi|162164266|gb|FC342081.1|FC342081
EST:     CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG                         GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: gi|67570257|gb|BJ943081.1|BJ943081
EST:     CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAN                         GTTGCATCTACTCACG
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtttgtgatccaaaatgcaacgttttattgacatcacctcttttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCAGGTCGCACACGTGCCGGAGGGCGTCAACATCGTCCTCACATACGACCAA
                            tattgac  putative branch site (score: 2)
                                    tcacctctttt  CT-rich tract
                         ttttattga  TA-rich tract