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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatatcataacccttcaaagttctctttaaagcaacccaaagctcgaaatccgtcacttcaattggttatttcaaatgtaatttttactgtatctgaccgcgttagggtgattctcaatttttcagGTGTTTCCTCAAAGCTCTCGTTCCGCTGATGCGACGCCTGCCTCCAGTGACCCTGCTTCAGGAGTCCATCATCCAAAGCCACTTCAGATCCTTCACAGCT

Basic information

species Physcomitrella patens
transcript PP1S48_141V6.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaatgtaatttttactgtatctgaccgcgttagggtgattctcaatttttcagGTGTTTCCTCAAAGCTCTCGTTCCGCTGATGCGACGCCTGCCTCCAGTGACCCTGCTTCAGGAGTCCATCATCCAAAGCCACTTCAGATCCTTCACAGCT
                    atctgac  putative branch site (score: 3)
                                               tttttc  putative PPT
       taatttttactgtat  TA-rich tract