1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgatgaacatttgattgcaaccatctgaatacagatccacatgattaaaacaaaaaattcggtggaactagtatgctgatctgtgatttgtgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACACGGTTGCGGTGAATCTGAACGGAGCCTACTATTTGTCGCTGCTCGCGTT
species | Physcomitrella patens |
transcript | PP1S488_11V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATAAGATTCATGTGNTCATCAACCATGCTG CAAAA-TTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACAEST: gi|18324781|gb|BJ156776.1|BJ156776
genomic: GTGATAAGATTCATGTGCTCATCAACAATGCTGgtatgattca ... tgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
EST: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTG CAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACAEST: gi|208376880|gb|DC906835.1|DC906835
genomic: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTGgtatgattca ... tgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
EST: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTG CAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACAEST: gi|162262858|gb|FC439277.1|FC439277
genomic: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTGgtatgattca ... tgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
EST: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTG CAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACAEST: gi|100383633|gb|BY969162.1|BY969162
genomic: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTGgtatgattca ... tgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
EST: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTG CAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACAEST: gi|162262857|gb|FC439276.1|FC439276
genomic: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTGgtatgattca ... tgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
EST: CAACAATGCTG CAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACAEST: gi|208362168|gb|DC943553.1|DC943553
genomic: CAACAATGCTGgtatgattca ... tgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
EST: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTG CAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACAEST: gi|18364080|gb|BJ196153.1|BJ196153
genomic: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTGgtatgattca ... tgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
EST: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTG CAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACAEST: gi|67575819|gb|BJ948643.1|BJ948643
genomic: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTGgtatgattca ... tgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
EST: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTG CAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
genomic: AACAGTTAAACGCTTCGGTGATAAGATTCATGTGCTCATCAACAATGCTGgtatgattca ... tgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACA
taaaacaaaaaattcggtggaactagtatgctgatctgtgatttgtgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACACGGTTGCGGTGAATCTGAACGGAGCCTACTATTTGTCGCTGCTCGCGTT
tgctgat putative branch site (score: 3)
aaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgaacatttgattgcaaccatctgaatacagatccacatgattaaaacaaaaaattcggtggaactagtatgctgatctgtgatttgtgtttatcagCAAAACTTCCTCATAGTGGAGAAGCCGATCCATTGAAGGAGTTCACAGACACGGTTGCGGTGAATCTGAACGGAGCCTACTATTTGTCGCTGCTCGCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - -cacatga