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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagagatattgaaaatgctctcgttgatttgaaatagaatttgaaggttagcatctttatttttaattcctgacgaagatattgttgtttttccaccagATTGTTGTGGACGACCAAACATATTTTCACAGTATATACTATTTTAACTGGAACTGATGACTCGCAAACATTACCTTAAATCTTTCAATACTGCGGCTGC

Basic information

species Physcomitrella patens
transcript PP1S487_18V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100370529|gb|BY985454.1|BY985454
EST:     TAGAGTTATTTGTGATGCAACATGCAGCAATGAATAACAATTCTGATTAG                         ATTGTTGTGGACGACCAAACATATTTTCACAGTATATACTATTTTAACTGG
genomic: TAGAGTTATTTGTGATGCAACATGCAGCAATGAATAACAATTCTGATTAGgtgagttcta ... tttccaccagATTGTTGTGGACGACCAAACATATTTTCACAGTATATACTATTTTAACTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttagcatctttatttttaattcctgacgaagatattgttgtttttccaccagATTGTTGTGGACGACCAAACATATTTTCACAGTATATACTATTTTAACTGGAACTGATGACTCGCAAACATTACCTTAAATCTTTCAATACTGCGGCTGC
                       tcctgac  putative branch site (score: 2)
                                        ttgtttttcc  putative PPT
        atctttatttttaatt  TA-rich tract