1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttggcagcattaggccatgaactttaatggaacttcctgttttcagctgcttttgcattagaatacttctcaatctgttgaatttgggaaacatggggtccaatactcatgattttgggttcggttgtgcctaatgcagGGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGGCAAGCGCTAGGAAATGCATGGAAAGAAAGTGTCAATCTGGTGCACAA
species | Physcomitrella patens |
transcript | PP1S480_2V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAG GGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGGEST: gi|162265245|gb|FC440168.1|FC440168
genomic: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAGgtttggcagc ... cctaatgcagGGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGG
EST: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAG GGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGGEST: gi|100417890|gb|BY993235.1|BY993235
genomic: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAGgtttggcagc ... cctaatgcagGGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGG
EST: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAG GGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGGEST: gi|162186993|gb|FC363399.1|FC363399
genomic: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAGgtttggcagc ... cctaatgcagGGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGG
EST: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAG GGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGGEST: gi|100356913|gb|BY965342.1|BY965342
genomic: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAGgtttggcagc ... cctaatgcagGGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGG
EST: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAG GGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGGEST: gi|162196722|gb|FC374661.1|FC374661
genomic: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAGgtttggcagc ... cctaatgcagGGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGG
EST: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAG GGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGG
genomic: CTGCCTTAACGAAATTGGAGAATGCGAGTCAAGACTCTTTCCTTGGACAGgtttggcagc ... cctaatgcagGGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGG
tgggaaacatggggtccaatactcatgattttgggttcggttgtgcctaatgcagGGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGGCAAGCGCTAGGAAATGCATGGAAAGAAAGTGTCAATCTGGTGCACAA
gcctaat putative branch site (score: 11)
atgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggcagcattaggccatgaactttaatggaacttcctgttttcagctgcttttgcattagaatacttctcaatctgttgaatttgggaaacatggggtccaatactcatgattttgggttcggttgtgcctaatgcagGGTCTAAAAGTACTGGATGACTCGGTTGATAACCTGACTACGGGTGCATGGCAAGCGCTAGGAAATGCATGGAAAGAAAGTGTCAATCTGGTGCACAA
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