1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccttcactttcctttggattcacactttagatgcgacgattacagcactaaggtttgtttttttttttgctgacatggcatattctttggatgtttacagAGCTATGAGGTAGGAGATATTAAGGAGAAGGAAATTTACGATCATGTCTTTAAGAACGTACTTAAGGGGCGCCTAACTTTCAAGCATATGATTAAAGGTA
species | Physcomitrella patens |
transcript | PP1S47_94V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCGCTACTTCTTGACTAANATTAGGGTTTCCTTTGCGCAAAGTCTGAGG AGCTATGAGGTAGGAGATATTAAGGAGAAAGGAA-TTTACGATCATGTCTTEST: gi|208379116|gb|DC911641.1|DC911641
genomic: CGCGCTACTTCTTGACTAAAATTAGGGTTTCCTTTGCGCAAAGTCTGAGGgtaatgcttc ... atgtttacagAGCTATGAGGTAGGAGATATTAAGGAGAA-GGAAATTTACGATCATGTCTT
EST: CGCGCTACTTCTTGACTAAAATTAGGGTTTCCTTTGCGCAAAGTCTGAGG AGCTATGAGGTAGGAGATATTAAGGAGAAGGAAATTTACGATCATGTCTTT
genomic: CGCGCTACTTCTTGACTAAAATTAGGGTTTCCTTTGCGCAAAGTCTGAGGgtaatgcttc ... atgtttacagAGCTATGAGGTAGGAGATATTAAGGAGAAGGAAATTTACGATCATGTCTTT
cactaaggtttgtttttttttttgctgacatggcatattctttggatgtttacagAGCTATGAGGTAGGAGATATTAAGGAGAAGGAAATTTACGATCATGTCTTTAAGAACGTACTTAAGGGGCGCCTAACTTTCAAGCATATGATTAAAGGTA
tgctgac putative branch site (score: 2)
tttgttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcactttcctttggattcacactttagatgcgacgattacagcactaaggtttgtttttttttttgctgacatggcatattctttggatgtttacagAGCTATGAGGTAGGAGATATTAAGGAGAAGGAAATTTACGATCATGTCTTTAAGAACGTACTTAAGGGGCGCCTAACTTTCAAGCATATGATTAAAGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC