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...ggtagtggctatctgttttgttttgcgattcgttcatatatttattttttttctctgcctgtatctcatcatttcattgagagtttgattgtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAAGGTGGATAAAGAGAAGCTGGTGGCTGGTACTCGAGTTGCACTAGACAT
species | Physcomitrella patens |
transcript | PP1S47_46V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCT TAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAEST: gi|18353546|gb|BJ185601.1|BJ185601
genomic: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCTgtaagtaatg ... gtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGANAAGTGTTGAGGCAGCTGGATTCTGAACGCT TAATTGTGAAGGCGAGCAGTGGCCCEST: gi|18330767|gb|BJ162773.1|BJ162773
genomic: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCTgtaagtaatg ... gtctgagcagTAATTGTGAAGGCGAGCAGTGGCCC
EST: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCT TAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAEST: gi|100450689|gb|CJ974389.1|CJ974389
genomic: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCTgtaagtaatg ... gtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCT TAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAEST: gi|208398538|gb|DC912383.1|DC912383
genomic: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCTgtaagtaatg ... gtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCT TAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAEST: gi|18357042|gb|BJ189101.1|BJ189101
genomic: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCTgtaagtaatg ... gtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCT TAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAEST: gi|100405000|gb|BY991388.1|BY991388
genomic: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCTgtaagtaatg ... gtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCT TAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAEST: gi|162269527|gb|FC445083.1|FC445083
genomic: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCTgtaagtaatg ... gtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCT TAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAEST: gi|18344191|gb|BJ176230.1|BJ176230
genomic: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCTgtaagtaatg ... gtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCT TAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACA
genomic: CGTGGGTCAAATCATCGGAGAAGTGTTGAGGCAGCTGGATTCTGAACGCTgtaagtaatg ... gtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACA
tttttttctctgcctgtatctcatcatttcattgagagtttgattgtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAAGGTGGATAAAGAGAAGCTGGTGGCTGGTACTCGAGTTGCACTAGACAT
gtttgat putative branch site (score: 13)
atttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtagtggctatctgttttgttttgcgattcgttcatatatttattttttttctctgcctgtatctcatcatttcattgagagtttgattgtctgagcagTAATTGTGAAGGCGAGCAGTGGCCCACGGTATGTGGTTGGATGCCGCAACAAGGTGGATAAAGAGAAGCTGGTGGCTGGTACTCGAGTTGCACTAGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG