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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtaattacggatctgtacgtatcgtgtcatagcagagtgaaatgcgctgatatattcattttgttgtgtgttaatcatctttcgtgtgcaatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAGCCAAAAGCATGTTGATTTCGCCCTATCCAGTCCACTTGGTGGTGGAAGA

Basic information

species Physcomitrella patens
transcript PP1S47_40V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850681|gb|BJ608689.1|BJ608689
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|37839589|gb|BJ597597.1|BJ597597
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|37822347|gb|BJ580413.1|BJ580413
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|37824538|gb|BJ582604.1|BJ582604
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|7286429|gb|AW598858.1|AW598858
EST:     CCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: CCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|37832576|gb|BJ590588.1|BJ590588
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162238065|gb|FC414255.1|FC414255
EST:     GCCAAGTCCATCCATCACGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18345488|gb|BJ177531.1|BJ177531
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18330831|gb|BJ162837.1|BJ162837
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|208360679|gb|DC946431.1|DC946431
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18343350|gb|BJ175388.1|BJ175388
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18373410|gb|BJ204988.1|BJ204988
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTTGATGTGCCGTCATTTCATGGTCCGCGTTGAC
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTT-GATGTGCCGTCATT-CATGGTCCGCGTTGAC
EST: gi|162258349|gb|FC434276.1|FC434276
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162238064|gb|FC414254.1|FC414254
EST:     GCCAAGTCCATCCATCACGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18339245|gb|BJ171272.1|BJ171272
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|208351530|gb|DC905707.1|DC905707
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162225472|gb|FC401224.1|FC401224
EST:     GCCAAGTCCATCCATCACGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162258348|gb|FC434275.1|FC434275
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162264179|gb|FC440241.1|FC440241
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162250877|gb|FC426921.1|FC426921
EST:     GCCAAGTCCATCCATCACGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|67691386|gb|BJ951619.1|BJ951619
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|37831045|gb|BJ589057.1|BJ589057
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162268010|gb|FC444091.1|FC444091
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18355636|gb|BJ187695.1|BJ187695
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162279610|gb|FC455869.1|FC455869
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18343142|gb|BJ175180.1|BJ175180
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|19782393|gb|BQ039848.1|BQ039848
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162268456|gb|FC444329.1|FC444329
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|37847405|gb|BJ605413.1|BJ605413
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18369370|gb|BJ201456.1|BJ201456
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162279596|gb|FC455868.1|FC455868
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162274239|gb|FC449999.1|FC449999
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162274238|gb|FC449998.1|FC449998
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|15327590|gb|BI488344.1|BI488344
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|19790182|gb|BQ041741.1|BQ041741
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162249996|gb|FC427097.1|FC427097
EST:     GCCAAGTCCATCCATCACGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|208383141|gb|DC919588.1|DC919588
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18362283|gb|BJ194353.1|BJ194353
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|162250878|gb|FC426922.1|FC426922
EST:     GCCAAGTCCATCCATCACGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|18326314|gb|BJ158313.1|BJ158313
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCC
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCC
EST: gi|18334081|gb|BJ166097.1|BJ166097
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
EST: gi|67508165|gb|BJ941036.1|BJ941036
EST:     GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAG                         GGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG
genomic: GCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 35 (downstream exon)
Score: 15

AGAACTTTTTGGAGCGCCGGCTTCAGACTCTCGTGTTCAAATCTGGGATGGCCAAGTCCATCCATCATGCCCGAGTTTTGATCAAGCAGCGTCACATCAGgtgtgttcta ... caatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAGCCAAAAGCATGTTGATTTCGCCCTATCCAGTCCACTTGGTGGTGGAAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgctgatatattcattttgttgtgtgttaatcatctttcgtgtgcaatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAGCCAAAAGCATGTTGATTTCGCCCTATCCAGTCCACTTGGTGGTGGAAGA
                         tgttaat  putative branch site (score: 15)
      atatattcattttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgtaattacggatctgtacgtatcgtgtcatagcagagtgaaatgcgctgatatattcattttgttgtgtgttaatcatctttcgtgtgcaatttgcagGGTCGGAAAGCAGATTGTTGATGTGCCGTCATTCATGGTCCGCGTTGACAGCCAAAAGCATGTTGATTTCGCCCTATCCAGTCCACTTGGTGGTGGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA