Sequence
atgc intronic sequence ATGC exonic sequencegtcagacaaccttcccatacttcggcaagctcatcagcaatgcctttccttttctgcttagaactgagtcctcgcacagctcggcccttttccccttttcttcctttcctccgttgtggattcaaagcagtgccacttgtgtcttacgcttttgcgattgcttttgctattgcttttgcagATCCTCCTGCGGCATCGGCACCTTGGGATGGTAGTTGGCTTACGGGTGAAGGTTTAAACTGGATGCCTCATGGAACTCGCCGCCTATGTGATGAATGATC
Basic information
species | Physcomitrella patens |
transcript | PP1S47_331V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37831754|gb|BJ589766.1|BJ589766EST: TTGTTTCTTAAACCCATCCATCGTGTTCGCCGGTCCGATCCTTGGTCAAG ATCCTCCTGCGGCATCGGCACCTTGGGATGGTAGTTGGCTTACGGGTGAAG
genomic: TTGTTTCTTAAACCCATCCATCGTGTTCGCCGGTCCGATCCTTGGTCAAGgtcagacaac ... gcttttgcagATCCTCCTGCGGCATCGGCACCTTGGGATGGTAGTTGGCTTACGGGTGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcagtgccacttgtgtcttacgcttttgcgattgcttttgctattgcttttgcagATCCTCCTGCGGCATCGGCACCTTGGGATGGTAGTTGGCTTACGGGTGAAGGTTTAAACTGGATGCCTCATGGAACTCGCCGCCTATGTGATGAATGATC
gtcttac putative branch site (score: 3)
ttgctttt putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagacaaccttcccatacttcggcaagctcatcagcaatgcctttccttttctgcttagaactgagtcctcgcacagctcggcccttttccccttttcttcctttcctccgttgtggattcaaagcagtgccacttgtgtcttacgcttttgcgattgcttttgctattgcttttgcagATCCTCCTGCGGCATCGGCACCTTGGGATGGTAGTTGGCTTACGGGTGAAGGTTTAAACTGGATGCCTCATGGAACTCGCCGCCTATGTGATGAATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA