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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgctctaatgttaatctagaacaagaatagcttgagttcgtctttgatcatcttaccttggaagtggttgtaactggggaccaatgactgcttctttcagGAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGAAGGCGAAAGGTGCAGTGATTTTGATAGTAAATGCCTGTTCAAGCAGGGA

Basic information

species Physcomitrella patens
transcript PP1S47_31V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162197057|gb|FC375243.1|FC375243
EST:     GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGG                         GAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA
genomic: GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGGgtatatgatc ... cttctttcagGAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA
EST: gi|162188960|gb|FC364350.1|FC364350
EST:     GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGG                         GAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA
genomic: GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGGgtatatgatc ... cttctttcagGAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA
EST: gi|162200905|gb|FC377308.1|FC377308
EST:     GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGG                         GAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA
genomic: GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGGgtatatgatc ... cttctttcagGAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcatcttaccttggaagtggttgtaactggggaccaatgactgcttctttcagGAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGAAGGCGAAAGGTGCAGTGATTTTGATAGTAAATGCCTGTTCAAGCAGGGA
                      ttgtaac  putative branch site (score: 2)
                                          ctgcttctttc  putative PPT