1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatctactctcgaggttgattatccttgattgtcttgtttttgtggctcaattgctgctatccagtctgacatggagtcgtttggaatttggtccacagTACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAAC
species | Physcomitrella patens |
transcript | PP1S47_284V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATGGCGACGTATGTCAGCTCCAACATCACAACGGAGCTCATTCAGAAG TACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAACEST: gi|100415926|gb|BY956992.1|BY956992
genomic: ACATGGCGACGTATGCCAGCTCCAACATCACAACGGAGCTCATTCAGAAGgtatgtccca ... tggtccacagTACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAAC
EST: ACATGGCGACGTATGCCAGCTCCAACATCACAACGGAGCTCATTCAGAAG TACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAACEST: gi|18350126|gb|BJ182177.1|BJ182177
genomic: ACATGGCGACGTATGCCAGCTCCAACATCACAACGGAGCTCATTCAGAAGgtatgtccca ... tggtccacagTACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAAC
EST: ACATGGCGACGTATGCCAGCTCCAACATCACAACGGAGCTCATTCAGAAG TACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAACEST: gi|18347797|gb|BJ179844.1|BJ179844
genomic: ACATGGCGACGTATGCCAGCTCCAACATCACAACGGAGCTCATTCAGAAGgtatgtccca ... tggtccacagTACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAAC
EST: ACATGGCGACGTATGCCAGCTCCAACATCACAACGGAGCTCATTCAGAAG TACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAAC
genomic: ACATGGCGACGTATGCCAGCTCCAACATCACAACGGAGCTCATTCAGAAGgtatgtccca ... tggtccacagTACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAAC
ggctcaattgctgctatccagtctgacatggagtcgtttggaatttggtccacagTACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAAC
gtctgac putative branch site (score: 6)
aattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatctactctcgaggttgattatccttgattgtcttgtttttgtggctcaattgctgctatccagtctgacatggagtcgtttggaatttggtccacagTACTTGGACGAGAATAAGCAGTTGATTCTCGCTATCCTCGACAACCAAAACCTCGGCAAGCTCAATGAGTGTGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA