1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaagtgttaatgtagttatgtatctcgtcatgattagatgcttatcttattggtggtgtgcgcgatttggatgactattaatgaactttctttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCTTGAAGGAGAGGTTGTTGCTTCTACTCTAGTGGGCGCAGTCGCCGCTGT
species | Physcomitrella patens |
transcript | PP1S47_244V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18366948|gb|BJ199028.1|BJ199028
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18326122|gb|BJ158121.1|BJ158121
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCGAACGCCTGCCCEST: gi|18374190|gb|BJ205768.1|BJ205768
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|100399062|gb|BY954180.1|BY954180
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18367539|gb|BJ199622.1|BJ199622
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18374946|gb|BJ206524.1|BJ206524
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18329595|gb|BJ161601.1|BJ161601
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18329333|gb|BJ161339.1|BJ161339
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18363432|gb|BJ195504.1|BJ195504
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18364334|gb|BJ196407.1|BJ196407
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|100446323|gb|CJ970622.1|CJ970622
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18371365|gb|BJ202967.1|BJ202967
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCEST: gi|18358406|gb|BJ190465.1|BJ190465
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
EST: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAG GAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
genomic: GGCCGCCATTGGAAACATGTTGCAAGGATGGGACGGTGGAGCCATTGCAGgtatggacat ... tttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCC
cttattggtggtgtgcgcgatttggatgactattaatgaactttctttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCTTGAAGGAGAGGTTGTTGCTTCTACTCTAGTGGGCGCAGTCGCCGCTGT
tattaat putative branch site (score: 2)
ctttctttgtctc putative PPT
tattaatgaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtgttaatgtagttatgtatctcgtcatgattagatgcttatcttattggtggtgtgcgcgatttggatgactattaatgaactttctttgtctcagGAGCACTCCTGTACTTGAAGCCCGAATTTCATCTGGATCAAACGCCTGCCCTTGAAGGAGAGGTTGTTGCTTCTACTCTAGTGGGCGCAGTCGCCGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG