1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cccaattggctatcgatttctcgtaattgcatgtgctgcgacagcgtaacattctttagtcttctctgtggttctaaatcttccttcatgtgagatgcagACTGGTGTCTCAGTTAGCTCCGTTTCCTGGCATGCAGCATTTGGATGTGGCTGGGGGTACAG
species | Physcomitrella patens |
transcript | PP1S47_222V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCATGAATGATCTTATGAGTGGAGGCTTGCACCGCCTCTGGAAAGACAG ACTGGTGTCTCAGTTAGCTCCGTTTCCTGGCATGCAGCATTTGGATGTGGCEST: gi|208369514|gb|DC936304.1|DC936304
genomic: CTCATGAATGATCTTATGAGTGGAGGCTTGCACCGCCTCTGGAAAGACAGgtatctcttt ... tgagatgcagACTGGTGTCTCAGTTAGCTCCGTTTCCTGGCATGCAGCATTTGGATGTGGC
EST: CTCATGAATGATCTTATGAGTGGAGGCTTGCACCGCCTCTGGAAAGACAG ACTGGTGTCTCAGTTAGCTCCGTTTCTTGGCATGCAGCATTTGGATGTGGCEST: gi|162194988|gb|FC369053.1|FC369053
genomic: CTCATGAATGATCTTATGAGTGGAGGCTTGCACCGCCTCTGGAAAGACAGgtatctcttt ... tgagatgcagACTGGTGTCTCAGTTAGCTCCGTTTCCTGGCATGCAGCATTTGGATGTGGC
EST: CTCATGAATGATCTTATGAGTGGAGGCTTGCACCGCCTCTGGAAAGACAG ACTGGTGTCTCAGTTAGCTCCGTTTCCTGGCATGCAGCATTTGGATGTGGC
genomic: CTCATGAATGATCTTATGAGTGGAGGCTTGCACCGCCTCTGGAAAGACAGgtatctcttt ... tgagatgcagACTGGTGTCTCAGTTAGCTCCGTTTCCTGGCATGCAGCATTTGGATGTGGC
gtaacattctttagtcttctctgtggttctaaatcttccttcatgtgagatgcagACTGGTGTCTCAGTTAGCTCCGTTTCCTGGCATGCAGCATTTGGATGTGGCTGGGGGTACAG
ttctaaa putative branch site (score: 2)
attcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccaattggctatcgatttctcgtaattgcatgtgctgcgacagcgtaacattctttagtcttctctgtggttctaaatcttccttcatgtgagatgcagACTGGTGTCTCAGTTAGCTCCGTTTCCTGGCATGCAGCATTTGGATGTGGCTGGGGGTACAG
- - - - - - - - - - - - - - - - -tgctgcg