1 5' 3' | 2 5' 3' |
gtaaaccaattttgttgccgtgtacggtctttgcataaggcaatttatgggttaaccattgttttaaaaggtaattactgtattagtcatgtctttgcgagcgtgtacagtgcataatcagggaactgtgatacctagcacttttctacgtcttactgatcatttatttcattttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCGTTTACAGATTCATCGTCGGAGTTGTTGCTTCATTATACTATGTCCTTG
species | Physcomitrella patens |
transcript | PP1S47_21V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|162270393|gb|FC447093.1|FC447093
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|162230435|gb|FC407090.1|FC407090
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|67722514|gb|BJ972773.1|BJ972773
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|208358952|gb|DC946381.1|DC946381
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|208360935|gb|DC954105.1|DC954105
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|208372761|gb|DC952648.1|DC952648
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|208360609|gb|DC957848.1|DC957848
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|208356619|gb|DC922409.1|DC922409
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|162161703|gb|FC337870.1|FC337870
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|162195260|gb|FC369273.1|FC369273
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|162270392|gb|FC447092.1|FC447092
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCEST: gi|162237105|gb|FC413264.1|FC413264
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
EST: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAG CTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
genomic: GATGTTCGGTTACTGGAGTGAAGGCAGAAGCTGGAGAATCTCCGTTAAAGgtaaaccaat ... ttttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTC
tgtgatacctagcacttttctacgtcttactgatcatttatttcattttgtgcagCTGGGACCGAAGGCAGAGGACGTGAAGGGCCCGTGGAATCCATTGTCCTTCGTTTACAGATTCATCGTCGGAGTTGTTGCTTCATTATACTATGTCCTTG
tactgat putative branch site (score: 72)
tttcatttt putative PPT
atcatttatttcattt TA-rich tract